Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE965_RS20960 Genome accession   NZ_CP019015
Coordinates   3836770..3837246 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain Ecol_AZ162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3831770..3842246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE965_RS20915 (BE965_21460) tnpB 3833164..3833514 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  BE965_RS20920 (BE965_21465) - 3833511..3833936 (-) 426 WP_000422741.1 transposase -
  BE965_RS20925 (BE965_21470) - 3834018..3834170 (-) 153 WP_050482493.1 EutP/PduV family microcompartment system protein -
  BE965_RS20930 - 3834224..3834370 (+) 147 Protein_3572 transposase domain-containing protein -
  BE965_RS28435 (BE965_21475) - 3834659..3834739 (-) 81 Protein_3573 hypothetical protein -
  BE965_RS20935 (BE965_21480) yeeW 3834785..3834979 (-) 195 WP_000988600.1 DUF5983 family protein -
  BE965_RS20940 (BE965_21485) cbtA 3834976..3835350 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BE965_RS20945 (BE965_21490) - 3835439..3835807 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE965_RS20950 (BE965_21495) - 3835823..3836467 (-) 645 WP_000086752.1 hypothetical protein -
  BE965_RS20955 (BE965_21500) - 3836486..3836707 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  BE965_RS20960 (BE965_21505) radC 3836770..3837246 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  BE965_RS20965 (BE965_21510) - 3837262..3837735 (-) 474 WP_001350782.1 antirestriction protein -
  BE965_RS20975 (BE965_21520) - 3838077..3838895 (-) 819 WP_022645069.1 DUF932 domain-containing protein -
  BE965_RS20985 (BE965_21525) - 3839116..3839526 (-) 411 WP_000846703.1 hypothetical protein -
  BE965_RS20990 (BE965_21530) - 3839542..3839892 (-) 351 Protein_3583 hypothetical protein -
  BE965_RS20995 (BE965_21535) istB 3839975..3840721 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=178156 BE965_RS20960 WP_001186775.1 3836770..3837246(-) (radC) [Escherichia coli strain Ecol_AZ162]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=178156 BE965_RS20960 WP_001186775.1 3836770..3837246(-) (radC) [Escherichia coli strain Ecol_AZ162]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399