Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BE965_RS20885 Genome accession   NZ_CP019015
Coordinates   3826196..3827623 (-) Length   475 a.a.
NCBI ID   WP_000980556.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ162     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3821196..3832623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE965_RS20845 (BE965_21390) yefM 3821401..3821652 (+) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  BE965_RS20850 (BE965_21395) yoeB 3821649..3821903 (+) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  BE965_RS20855 (BE965_21400) yeeZ 3821986..3822810 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BE965_RS20860 (BE965_21405) yeeY 3822856..3823785 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BE965_RS28430 yoeI 3824000..3824062 (+) 63 WP_010723108.1 membrane protein YoeI -
  BE965_RS20865 (BE965_21410) plaP 3824052..3825410 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  BE965_RS20875 (BE965_21420) tnpA 3825627..3826085 (+) 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -
  BE965_RS20885 (BE965_21430) sbcB 3826196..3827623 (-) 1428 WP_000980556.1 exodeoxyribonuclease I Machinery gene
  BE965_RS20890 (BE965_21435) dacD 3827832..3828998 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BE965_RS20895 (BE965_21440) sbmC 3829117..3829590 (+) 474 WP_001105368.1 DNA gyrase inhibitor SbmC -
  BE965_RS20900 (BE965_21445) yeeA 3829788..3830846 (+) 1059 WP_001200889.1 FUSC family protein -
  BE965_RS20905 (BE965_21450) tmaR 3831018..3831347 (+) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54437.70 Da        Isoelectric Point: 5.4700

>NTDB_id=178155 BE965_RS20885 WP_000980556.1 3826196..3827623(-) (sbcB) [Escherichia coli strain Ecol_AZ162]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=178155 BE965_RS20885 WP_000980556.1 3826196..3827623(-) (sbcB) [Escherichia coli strain Ecol_AZ162]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTAGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTTTGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583