Detailed information NTG0178142

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE965_RS17160
• Genome accession: NZ_CP019015
• Coordinates: 3063759..3064751 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_AZ162
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3058759..3069751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE965_RS17130 (BE965_17615)	ispD	3058820..3059530 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BE965_RS17135 (BE965_17620)	ispF	3059530..3060009 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BE965_RS17140 (BE965_17625)	truD	3060006..3061055 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
BE965_RS17145 (BE965_17630)	surE	3061036..3061797 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BE965_RS17150 (BE965_17635)	pcm	3061791..3062417 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BE965_RS17155 (BE965_17640)	nlpD	3062602..3063696 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
BE965_RS17160 (BE965_17645)	rpoS	3063759..3064751 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BE965_RS17165 (BE965_17650)	-	3064922..3065473 (-)	552	WP_001179444.1	flavodoxin family protein	-
BE965_RS17170 (BE965_17655)	-	3065698..3066741 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
BE965_RS17175 (BE965_17660)	ygbN	3066884..3068248 (-)	1365	WP_000104433.1	GntP family transporter	-
BE965_RS17180 (BE965_17665)	ygbM	3068337..3069113 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=178142 BE965_RS17160 WP_000081550.1 3063759..3064751(+) (rpoS) [Escherichia coli strain Ecol_AZ162]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=178142 BE965_RS17160 WP_000081550.1 3063759..3064751(+) (rpoS) [Escherichia coli strain Ecol_AZ162]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715