Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BTI679_RS08320 Genome accession   NZ_CP015257
Coordinates   1566280..1566882 (-) Length   200 a.a.
NCBI ID   WP_064476602.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain Bt18679     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1561280..1571882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI679_RS08300 (BTI679_16790) dnaD 1561611..1562318 (+) 708 WP_064476605.1 DNA replication protein DnaD -
  BTI679_RS08305 (BTI679_16800) nth 1562334..1562981 (+) 648 WP_002158563.1 endonuclease III -
  BTI679_RS08310 (BTI679_16810) - 1562985..1563503 (+) 519 WP_064476604.1 YpoC family protein -
  BTI679_RS08315 (BTI679_16820) - 1563527..1566214 (-) 2688 WP_103655405.1 PBP1A family penicillin-binding protein -
  BTI679_RS08320 (BTI679_16830) recU 1566280..1566882 (-) 603 WP_064476602.1 Holliday junction resolvase RecU Machinery gene
  BTI679_RS08325 (BTI679_16840) - 1566986..1568011 (+) 1026 WP_103655443.1 DUF2515 domain-containing protein -
  BTI679_RS08330 - 1568151..1568327 (-) 177 WP_001982922.1 hypothetical protein -
  BTI679_RS08335 (BTI679_16860) - 1568413..1568655 (+) 243 WP_001252042.1 hypothetical protein -
  BTI679_RS08340 (BTI679_16870) - 1568671..1569015 (+) 345 WP_000872967.1 YppE family protein -
  BTI679_RS08345 (BTI679_16880) - 1569040..1569231 (-) 192 WP_000242661.1 YppF family protein -
  BTI679_RS08350 (BTI679_16890) - 1569409..1569978 (+) 570 WP_103655406.1 YppG family protein -
  BTI679_RS08355 (BTI679_16900) - 1570135..1570575 (+) 441 WP_000546280.1 CotD family spore coat protein -
  BTI679_RS08360 (BTI679_16910) - 1570632..1571186 (+) 555 WP_048543489.1 DUF1273 domain-containing protein -
  BTI679_RS08365 (BTI679_16920) gpsB 1571284..1571622 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23343.60 Da        Isoelectric Point: 9.2649

>NTDB_id=178119 BTI679_RS08320 WP_064476602.1 1566280..1566882(-) (recU) [Bacillus wiedmannii strain Bt18679]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVLAHDGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=178119 BTI679_RS08320 WP_064476602.1 1566280..1566882(-) (recU) [Bacillus wiedmannii strain Bt18679]
ATGACCATTCGTTACCCAAACGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTACTCGCTCATGATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment