Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BTI679_RS00020 Genome accession   NZ_CP015257
Coordinates   3112..4239 (+) Length   375 a.a.
NCBI ID   WP_000470743.1    Uniprot ID   A0A164MC53
Organism   Bacillus wiedmannii strain Bt18679     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI679_RS00005 (BTI679_00010) dnaA 101..1441 (+) 1341 WP_000428027.1 chromosomal replication initiator protein DnaA -
  BTI679_RS00010 (BTI679_00020) dnaN 1620..2759 (+) 1140 WP_064475172.1 DNA polymerase III subunit beta -
  BTI679_RS00015 (BTI679_00030) yaaA 2887..3099 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  BTI679_RS00020 (BTI679_00040) recF 3112..4239 (+) 1128 WP_000470743.1 DNA replication/repair protein RecF Machinery gene
  BTI679_RS00025 (BTI679_00050) gyrB 4278..6200 (+) 1923 WP_000435974.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BTI679_RS00030 (BTI679_00060) gyrA 6289..8760 (+) 2472 WP_064475170.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43363.72 Da        Isoelectric Point: 6.7809

>NTDB_id=178101 BTI679_RS00020 WP_000470743.1 3112..4239(+) (recF) [Bacillus wiedmannii strain Bt18679]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=178101 BTI679_RS00020 WP_000470743.1 3112..4239(+) (recF) [Bacillus wiedmannii strain Bt18679]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
GATTATCGGTGAAAACGCACAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGACTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCAGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164MC53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653

Multiple sequence alignment