Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BTI247_RS21625 Genome accession   NZ_CP015250
Coordinates   4279787..4281526 (-) Length   579 a.a.
NCBI ID   WP_000947734.1    Uniprot ID   A0A9X5W4K1
Organism   Bacillus thuringiensis Bt18247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4274787..4286526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI247_RS21610 (BTI247_44440) - 4275103..4276629 (-) 1527 WP_069356183.1 glycosyltransferase family 39 protein -
  BTI247_RS21615 (BTI247_44450) spo0A 4277288..4278082 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  BTI247_RS21620 (BTI247_44460) spoIVB 4278370..4279668 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  BTI247_RS21625 (BTI247_44470) recN 4279787..4281526 (-) 1740 WP_000947734.1 DNA repair protein RecN Machinery gene
  BTI247_RS21630 (BTI247_44480) argR 4281791..4282240 (-) 450 WP_001032580.1 arginine repressor ArgR -
  BTI247_RS21635 (BTI247_44490) - 4282383..4283222 (-) 840 WP_000111872.1 TlyA family RNA methyltransferase -
  BTI247_RS21640 (BTI247_44500) dxs 4283226..4285118 (-) 1893 WP_053563673.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BTI247_RS21645 (BTI247_44510) ispA 4285420..4286310 (-) 891 WP_069356184.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65839.94 Da        Isoelectric Point: 4.8260

>NTDB_id=178083 BTI247_RS21625 WP_000947734.1 4279787..4281526(-) (recN) [Bacillus thuringiensis Bt18247]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=178083 BTI247_RS21625 WP_000947734.1 4279787..4281526(-) (recN) [Bacillus thuringiensis Bt18247]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTGTTTTATGTTGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCATG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAACTA
GACATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAGAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAAGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGATGCATATCGTTCATTGAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCATATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAAATTTTAGCGTATGCAGATAAAATTGAACAAGAAATATTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACACCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAGCCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCAGATGGTTACGATCATGTGGA
ATTTTATATTTCGACCAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCTGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCAGATTCGCATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATCACAGATTTAACGACGGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment