Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BTI247_RS11015 Genome accession   NZ_CP015250
Coordinates   2144516..2144803 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis Bt18247     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139516..2149803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI247_RS10995 (BTI247_22660) - 2140692..2140889 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  BTI247_RS11000 (BTI247_22670) - 2140921..2141382 (+) 462 WP_000024996.1 NUDIX hydrolase -
  BTI247_RS11005 (BTI247_22680) nadE 2141427..2142245 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  BTI247_RS11010 (BTI247_22690) - 2142520..2144400 (+) 1881 WP_069355448.1 ABC transporter permease -
  BTI247_RS11015 (BTI247_22700) abrB 2144516..2144803 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BTI247_RS11020 (BTI247_22710) - 2145079..2146026 (+) 948 WP_053564709.1 serine protease -
  BTI247_RS11025 (BTI247_22720) - 2146066..2146374 (-) 309 WP_053564708.1 helix-turn-helix transcriptional regulator -
  BTI247_RS11030 (BTI247_22730) - 2146481..2147416 (+) 936 WP_053564707.1 aldo/keto reductase -
  BTI247_RS11035 (BTI247_22750) - 2147464..2148638 (+) 1175 Protein_2138 MFS transporter -
  BTI247_RS11040 (BTI247_22760) - 2148933..2149157 (-) 225 WP_000162602.1 hypothetical protein -
  BTI247_RS11045 (BTI247_22770) - 2149242..2149589 (-) 348 WP_000426321.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=178075 BTI247_RS11015 WP_000648324.1 2144516..2144803(+) (abrB) [Bacillus thuringiensis Bt18247]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=178075 BTI247_RS11015 WP_000648324.1 2144516..2144803(+) (abrB) [Bacillus thuringiensis Bt18247]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTCTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment