Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BTI247_RS09000 Genome accession   NZ_CP015250
Coordinates   1738059..1738661 (-) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus thuringiensis Bt18247     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1733059..1743661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTI247_RS08980 (BTI247_18520) dnaD 1733378..1734085 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  BTI247_RS08985 (BTI247_18530) nth 1734101..1734748 (+) 648 WP_000933035.1 endonuclease III -
  BTI247_RS08990 (BTI247_18540) - 1734752..1735270 (+) 519 WP_029441862.1 YpoC family protein -
  BTI247_RS08995 (BTI247_18550) - 1735296..1737992 (-) 2697 WP_069355316.1 PBP1A family penicillin-binding protein -
  BTI247_RS09000 (BTI247_18560) recU 1738059..1738661 (-) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  BTI247_RS09005 (BTI247_18570) - 1738765..1739790 (+) 1026 WP_069355317.1 DUF2515 domain-containing protein -
  BTI247_RS34475 - 1739942..1740121 (-) 180 WP_001987054.1 hypothetical protein -
  BTI247_RS09010 (BTI247_18590) - 1740207..1740449 (+) 243 WP_001252036.1 hypothetical protein -
  BTI247_RS09015 (BTI247_18600) - 1740465..1740809 (+) 345 WP_000786937.1 YppE family protein -
  BTI247_RS09020 (BTI247_18610) - 1740836..1741027 (-) 192 WP_000242652.1 YppF family protein -
  BTI247_RS09025 (BTI247_18620) - 1741205..1741828 (+) 624 WP_069355318.1 YppG family protein -
  BTI247_RS09030 (BTI247_18630) - 1741984..1742406 (+) 423 WP_000546292.1 CotD family spore coat protein -
  BTI247_RS09035 (BTI247_18640) - 1742463..1743017 (+) 555 Protein_1737 DUF1273 domain-containing protein -
  BTI247_RS09040 (BTI247_18650) gpsB 1743115..1743450 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=178074 BTI247_RS09000 WP_000155599.1 1738059..1738661(-) (recU) [Bacillus thuringiensis Bt18247]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=178074 BTI247_RS09000 WP_000155599.1 1738059..1738661(-) (recU) [Bacillus thuringiensis Bt18247]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment