Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE946_RS22990 Genome accession   NZ_CP019012
Coordinates   4172533..4173009 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4167533..4178009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE946_RS22945 (BE946_23475) yeeA 4168091..4169149 (+) 1059 WP_001200889.1 FUSC family protein -
  BE946_RS22950 (BE946_23480) tmaR 4169321..4169650 (+) 330 WP_000450409.1 DUF496 family protein -
  BE946_RS28515 - 4169751..4169933 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  BE946_RS28280 - 4170053..4170133 (+) 81 WP_023441679.1 hypothetical protein -
  BE946_RS27465 (BE946_23490) - 4170422..4170502 (-) 81 Protein_3946 hypothetical protein -
  BE946_RS22965 (BE946_23495) yeeW 4170548..4170742 (-) 195 WP_000988600.1 DUF5983 family protein -
  BE946_RS22970 (BE946_23500) cbtA 4170739..4171113 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BE946_RS22975 (BE946_23505) cbeA 4171202..4171570 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE946_RS22980 (BE946_23510) - 4171586..4172230 (-) 645 WP_000086752.1 hypothetical protein -
  BE946_RS22985 (BE946_23515) yeeT 4172249..4172470 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  BE946_RS22990 (BE946_23520) radC 4172533..4173009 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  BE946_RS22995 (BE946_23525) - 4173025..4173498 (-) 474 WP_001542276.1 antirestriction protein -
  BE946_RS23000 (BE946_23530) - 4173592..4173837 (-) 246 WP_001164966.1 hypothetical protein -
  BE946_RS23005 (BE946_23535) - 4173837..4174655 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  BE946_RS23015 (BE946_23540) - 4174876..4175286 (-) 411 WP_000846703.1 hypothetical protein -
  BE946_RS23020 (BE946_23545) - 4175302..4175652 (-) 351 Protein_3957 hypothetical protein -
  BE946_RS23025 (BE946_23550) istB 4175735..4176481 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  BE946_RS23030 (BE946_23555) istA 4176496..4177533 (-) 1038 Protein_3959 IS21-like element ISEc12 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=178073 BE946_RS22990 WP_001186200.1 4172533..4173009(-) (radC) [Escherichia coli strain Ecol_AZ161]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=178073 BE946_RS22990 WP_001186200.1 4172533..4173009(-) (radC) [Escherichia coli strain Ecol_AZ161]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392