Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6B45_RS02185 Genome accession   NZ_CP015247
Coordinates   395748..397541 (+) Length   597 a.a.
NCBI ID   WP_072613137.1    Uniprot ID   A0A2N9KBF0
Organism   Leuconostoc suionicum strain DSM 20241     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 390748..402541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B45_RS02165 (A6B45_02115) - 390922..392364 (+) 1443 WP_072613133.1 ABC transporter substrate-binding protein/permease -
  A6B45_RS02170 (A6B45_02120) - 392361..393113 (+) 753 WP_072613134.1 amino acid ABC transporter ATP-binding protein -
  A6B45_RS02175 (A6B45_02125) - 393180..394625 (+) 1446 WP_072613135.1 ABC transporter substrate-binding protein/permease -
  A6B45_RS02180 (A6B45_02130) - 394668..395669 (+) 1002 WP_072613136.1 competence protein CoiA -
  A6B45_RS02185 (A6B45_02135) pepF 395748..397541 (+) 1794 WP_072613137.1 oligoendopeptidase F Regulator
  A6B45_RS02190 (A6B45_02140) - 397652..398041 (+) 390 WP_081371156.1 cytidine deaminase -
  A6B45_RS02195 (A6B45_02145) - 398058..398498 (+) 441 WP_072613139.1 nucleoside 2-deoxyribosyltransferase -
  A6B45_RS02200 (A6B45_02150) - 398498..399427 (+) 930 WP_072613140.1 phosphoglycerate dehydrogenase -
  A6B45_RS02205 (A6B45_02155) - 399447..399815 (+) 369 WP_072613141.1 winged helix-turn-helix transcriptional regulator -
  A6B45_RS02210 (A6B45_02160) pheS 400119..401168 (+) 1050 WP_072613142.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67832.54 Da        Isoelectric Point: 4.6180

>NTDB_id=178013 A6B45_RS02185 WP_072613137.1 395748..397541(+) (pepF) [Leuconostoc suionicum strain DSM 20241]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWEAAFDETRKSAQALSKYAGHVGDSADVLREALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQGLYAELSANTAFFQPEVLALSNEKLDAYLATDGLKKYAHFFEVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLHRFVSLRKKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKDIVLAALAPLGDDYIAIVQKAFDERWIDVVENKGKRTGAYSSGSYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSTFYGSLNQKFYGSDLFPDEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=178013 A6B45_RS02185 WP_072613137.1 395748..397541(+) (pepF) [Leuconostoc suionicum strain DSM 20241]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTCACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAGCTGCTTTTGATGAAACACGAAAGTCTGCACAAGCATTAAGCAAGTATGCTGGACACGTCGGGGATTCTG
CTGATGTTTTGAGAGAAGCATTAGAAGCAGATTTGGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAACCAAAAGTACAGTGCGTATAATGCTCGTGTTCAAGGATTGTATGCTGAATTAAGTGC
GAATACAGCCTTCTTCCAGCCTGAAGTGTTAGCATTGTCAAACGAGAAGTTAGATGCATACTTAGCGACAGATGGTTTGA
AAAAATATGCACACTTCTTTGAAGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGATATTTTTAATGCTTCTGAACAGACGTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGCCTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTGCGTG
AGGAAGCATTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACTTTATCTTCACATGTCAAG
GGACATAACTTTTTAGCTAAAACCCGTCACTATGATTCAGCTCGTCAAGCTGCCGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACTGTTGATGCCAATCTGCCATTACTACACCGTTTTGTATCATTACGTAAAAAAATTC
TTAATGTTGACGATGTACATTCTTACGATTTATATGTACCACTTGTTGACGAAATTAATTTTGAAGTAACATATGAAAAG
GCAAAAGACATTGTTTTGGCGGCTTTGGCACCGTTAGGGGATGATTACATTGCTATTGTTCAAAAGGCTTTTGATGAACG
ATGGATTGATGTGGTTGAAAATAAAGGGAAACGTACTGGCGCTTATTCAAGTGGTTCTTATGACACAAAACCATTCATTT
TGCTCAATTGGCAGAATAATTTGAATAACGTTTATACGTTGGCTCATGAGATGGGACATTCGGTTCATTCATACTTTACA
CGTCATAATCAAGAGTATCATTATGGTGATTACCCAATATTCTTAGCCGAAATTGCTTCAACTACTAATGAGGGATTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCTTACGTATTGAACCAGTATCTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGTGCGGCTGGAGTGGCTTTGACA
GCTGACGAAATGAGTACATTCTATGGATCATTGAATCAAAAGTTTTATGGATCGGACTTATTTCCAGATGAAGCTATCGC
TTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTCTATCAATATTCTACTGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAACTATCTGAAAGCAGGTAATTCAGATTATGCT
TTGAATGTGATAAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-582)

Oligopeptidase F (Peptidase_M3_N)

(115-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N9KBF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.33

0.521

Multiple sequence alignment