Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6B45_RS00705 Genome accession   NZ_CP015247
Coordinates   128650..130020 (+) Length   456 a.a.
NCBI ID   WP_072612929.1    Uniprot ID   -
Organism   Leuconostoc suionicum strain DSM 20241     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 123650..135020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B45_RS00680 (A6B45_00650) - 124353..125291 (+) 939 WP_072612924.1 DUF1810 family protein -
  A6B45_RS00685 (A6B45_00655) - 125318..126748 (-) 1431 WP_072612925.1 aspartate ammonia-lyase -
  A6B45_RS00690 (A6B45_00660) rpiA 126866..127552 (-) 687 WP_072612926.1 ribose-5-phosphate isomerase RpiA -
  A6B45_RS00695 (A6B45_00665) - 127549..127851 (-) 303 WP_257786599.1 GNAT family N-acetyltransferase -
  A6B45_RS00700 (A6B45_00670) - 128062..128601 (+) 540 WP_072612928.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  A6B45_RS00705 (A6B45_00675) radA 128650..130020 (+) 1371 WP_072612929.1 DNA repair protein RadA Machinery gene
  A6B45_RS00710 (A6B45_00680) - 130023..130397 (+) 375 WP_072612930.1 hypothetical protein -
  A6B45_RS00715 (A6B45_00685) - 130440..131678 (-) 1239 WP_072612931.1 YhgE/Pip domain-containing protein -
  A6B45_RS00720 (A6B45_00690) - 131812..132396 (+) 585 WP_072612932.1 TetR/AcrR family transcriptional regulator -
  A6B45_RS00725 (A6B45_00695) gltX 132495..133991 (+) 1497 WP_072612933.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49193.41 Da        Isoelectric Point: 5.8326

>NTDB_id=178010 A6B45_RS00705 WP_072612929.1 128650..130020(+) (radA) [Leuconostoc suionicum strain DSM 20241]
MAKVKTQFICSNCGFVSARYLGRCSNCGEWGTLVEEKIQPESNDRKSRVSLDGRNAKVEKINEITSEEAPRVATKLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQEGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAVKKQ
IEELQPNFVVIDSVQTMQEPDVSSAVGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRNGGLIEVANPSEIFLEERLSGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGVELPHGIQVIGVTTLSEALKIALGE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=178010 A6B45_RS00705 WP_072612929.1 128650..130020(+) (radA) [Leuconostoc suionicum strain DSM 20241]
ATCGCTAAAGTAAAAACACAATTTATATGTTCCAACTGCGGTTTTGTTTCGGCGCGGTATTTGGGACGCTGCTCAAATTG
TGGTGAATGGGGCACGCTTGTTGAAGAAAAAATTCAACCAGAATCAAATGACCGTAAAAGTCGTGTGAGTCTAGATGGAC
GCAATGCAAAAGTTGAAAAAATAAACGAGATTACATCTGAAGAGGCACCGCGCGTAGCAACTAAGCTTAAGGAATTGAAC
CGAGTTTTAGGCGGTGGTGTTGTCCCAGGTTCCATGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTACT
ACTTCAAGTATCTGGACAACTCGCTCAAGAAGGTCGGGTACTATATGTAACCGGCGAAGAGTCTGCCACACAAGTGAAAC
TGCGTGCCGATCGCTTGGGCGTTGGGCACGATGAGTTTTATTTATATCCGGAAACGGATATGACGGCCGTGAAAAAGCAG
ATTGAGGAATTACAACCGAATTTTGTTGTTATTGACTCGGTACAAACCATGCAAGAACCTGATGTTTCATCGGCTGTTGG
ATCAGTATCACAAATTCGAGAAGTGACAGCCGATCTGTTGCAAATCGCCAAGACTAATAATATTTCGATATTTATAGTAG
GGCATGTGACTAAAGATGGTGCCATAGCGGGGCCAAAGATTCTGGAGCATATGGTCGATACTGTATTGTACTTTGAAGGA
GATAGTAATTATAAGTATCGCATTCTGCGTGCGGTTAAAAATCGTTTTGGCGCAACGAATGAATTAGGTATTTTTGAAAT
GCGTAATGGCGGTTTGATAGAAGTGGCTAATCCCTCTGAGATTTTCTTAGAAGAACGCTTATCTGGTGCCACTGGATCGG
CGATTGTGGTCGCGTTAGAAGGATCACGACCTATTTTGGTTGAATTACAAGCCCTAGTAACGCCGACCGTATTTGGTAAT
GCACAGCGTACAGCAGCAGGACTCGATAGAAATCGTGTGTCATTGATTATGGCAGTATTAGAAAAACGCGCTAACTTATT
ATTACAAAATCAAGATGCGTATTTAAAGGCAGCAGGTGGCGTGAAACTTGATGAACCAGCAATTGATTTAGCAATCGCTG
TTGCTCTGGCTAGTTCATATCATGATAAAGAATCAAGACCAAGTGATGTCTTTGTTGGCGAAATTGGTCTAACTGGTGAA
GTCCGTAGCGTAGCAGATATTGAAGGGCGATTAAAAGAAGCTAAAAAATTAGGCTTTAAGCGTGCTATTGTTCCTAAAAA
TAATTTAAACGGCGTTGAATTACCTCATGGTATTCAAGTTATTGGAGTAACAACATTAAGTGAGGCGCTTAAAATTGCCT
TAGGAGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(68-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

98.904

0.662
  radA Streptococcus pneumoniae D39

66.962

98.904

0.662
  radA Streptococcus pneumoniae R6

66.962

98.904

0.662
  radA Streptococcus pneumoniae TIGR4

66.962

98.904

0.662
  radA Streptococcus mitis NCTC 12261

66.741

98.904

0.66
  radA Streptococcus mitis SK321

66.741

98.904

0.66
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.616

Multiple sequence alignment