Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A5955_RS20660 Genome accession   NZ_CP015241
Coordinates   4206486..4207115 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-4465     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4201486..4212115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5955_RS20635 (A5955_20610) ycbZ 4201887..4203647 (-) 1761 WP_000156526.1 AAA family ATPase -
  A5955_RS20640 (A5955_20615) matP 4203833..4204285 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A5955_RS20645 (A5955_20620) ompA 4204361..4205401 (-) 1041 WP_000750416.1 porin OmpA -
  A5955_RS20655 (A5955_20630) sulA 4205758..4206267 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A5955_RS20660 (A5955_20635) sxy/tfoX 4206486..4207115 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A5955_RS20665 (A5955_20640) yccS 4207078..4209240 (-) 2163 WP_000875023.1 YccS family putative transporter -
  A5955_RS20670 (A5955_20645) yccF 4209250..4209696 (-) 447 WP_001261230.1 YccF domain-containing protein -
  A5955_RS20675 (A5955_20650) helD 4209819..4211873 (+) 2055 WP_001419031.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=177968 A5955_RS20660 WP_000839153.1 4206486..4207115(+) (sxy/tfoX) [Escherichia coli strain 2013C-4465]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=177968 A5955_RS20660 WP_000839153.1 4206486..4207115(+) (sxy/tfoX) [Escherichia coli strain 2013C-4465]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment