Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BE939_RS11510 Genome accession   NZ_CP019008
Coordinates   2091975..2093402 (-) Length   475 a.a.
NCBI ID   WP_000980551.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ159     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2086975..2098402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE939_RS11480 (BE939_11835) hisL 2087559..2087609 (-) 51 WP_001364200.1 his operon leader peptide -
  BE939_RS11485 (BE939_11840) yefM 2087892..2088143 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  BE939_RS11490 (BE939_11845) yoeB 2088140..2088394 (+) 255 WP_024705227.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  BE939_RS11495 (BE939_11850) yeeZ 2088477..2089301 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BE939_RS11500 (BE939_11855) yeeY 2089347..2090276 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BE939_RS26420 yoeI 2090491..2090553 (+) 63 WP_010723108.1 membrane protein YoeI -
  BE939_RS11505 (BE939_11860) plaP 2090543..2091901 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  BE939_RS11510 (BE939_11865) sbcB 2091975..2093402 (-) 1428 WP_000980551.1 exodeoxyribonuclease I Machinery gene
  BE939_RS11515 (BE939_11870) dacD 2093611..2094777 (+) 1167 WP_061157914.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BE939_RS11520 (BE939_11875) sbmC 2094896..2095369 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  BE939_RS11525 (BE939_11880) yeeA 2095567..2096625 (+) 1059 WP_001200890.1 FUSC family protein -
  BE939_RS11530 (BE939_11885) tmaR 2096797..2097126 (+) 330 WP_000450409.1 DUF496 family protein -
  BE939_RS11535 (BE939_11890) - 2097227..2097409 (-) 183 WP_061157913.1 EutP/PduV family microcompartment system protein -
  BE939_RS11540 - 2097463..2097609 (+) 147 Protein_1939 transposase domain-containing protein -
  BE939_RS26425 (BE939_11895) - 2097898..2097978 (-) 81 Protein_1940 hypothetical protein -
  BE939_RS11545 (BE939_11900) yeeW 2098024..2098218 (-) 195 WP_000988601.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.77 Da        Isoelectric Point: 5.3476

>NTDB_id=177956 BE939_RS11510 WP_000980551.1 2091975..2093402(-) (sbcB) [Escherichia coli strain Ecol_AZ159]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDD
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=177956 BE939_RS11510 WP_000980551.1 2091975..2093402(-) (sbcB) [Escherichia coli strain Ecol_AZ159]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGAT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATAAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCTGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-191)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment