Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BE939_RS08160 Genome accession   NZ_CP019008
Coordinates   1390849..1391364 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain Ecol_AZ159     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385849..1396364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE939_RS08115 (BE939_08425) csrA 1386705..1386890 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BE939_RS08145 (BE939_08455) yqaB 1388079..1388645 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BE939_RS08150 (BE939_08460) yqaA 1388642..1389070 (+) 429 WP_001287462.1 YqaA family protein -
  BE939_RS08155 (BE939_08465) gshA 1389143..1390699 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BE939_RS08160 (BE939_08470) luxS 1390849..1391364 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  BE939_RS08165 (BE939_08475) - 1391415..1392527 (-) 1113 WP_000638136.1 ATP-binding protein -
  BE939_RS08170 (BE939_08480) - 1392524..1393231 (-) 708 WP_001097132.1 RNA ligase family protein -
  BE939_RS08175 (BE939_08485) emrB 1393489..1395027 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  BE939_RS08180 (BE939_08490) emrA 1395044..1396216 (-) 1173 WP_021554174.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=177946 BE939_RS08160 WP_001130208.1 1390849..1391364(+) (luxS) [Escherichia coli strain Ecol_AZ159]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=177946 BE939_RS08160 WP_001130208.1 1390849..1391364(+) (luxS) [Escherichia coli strain Ecol_AZ159]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment