Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE939_RS06355 Genome accession   NZ_CP019008
Coordinates   1018616..1019092 (-) Length   158 a.a.
NCBI ID   WP_001696592.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013616..1024092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE939_RS06320 (BE939_06515) - 1013741..1014724 (-) 984 WP_061157979.1 KpsF/GutQ family sugar-phosphate isomerase -
  BE939_RS06325 (BE939_06520) - 1015535..1015705 (-) 171 Protein_957 IS110 family transposase -
  BE939_RS06330 (BE939_06525) - 1016047..1016889 (-) 843 WP_001290171.1 DUF4942 domain-containing protein -
  BE939_RS26320 - 1016974..1017171 (-) 198 WP_086795284.1 DUF957 domain-containing protein -
  BE939_RS26325 - 1017247..1017396 (-) 150 Protein_960 DUF5983 family protein -
  BE939_RS06340 (BE939_06535) - 1017393..1017770 (-) 378 WP_000854694.1 TA system toxin CbtA family protein -
  BE939_RS06345 (BE939_06540) - 1017860..1018228 (-) 369 WP_001285605.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE939_RS06350 (BE939_06545) - 1018308..1018529 (-) 222 Protein_963 DUF987 domain-containing protein -
  BE939_RS06355 (BE939_06550) radC 1018616..1019092 (-) 477 WP_001696592.1 RadC family protein Machinery gene
  BE939_RS06360 (BE939_06555) - 1019108..1019587 (-) 480 WP_001696591.1 antirestriction protein -
  BE939_RS06365 (BE939_06565) - 1019853..1020671 (-) 819 WP_001175153.1 DUF932 domain-containing protein -
  BE939_RS06370 (BE939_06570) - 1020761..1020994 (-) 234 WP_001278287.1 DUF905 family protein -
  BE939_RS06375 (BE939_06575) - 1021000..1021677 (-) 678 WP_001097368.1 hypothetical protein -
  BE939_RS06380 (BE939_06580) - 1021796..1022680 (-) 885 WP_000010392.1 GTPase -
  BE939_RS06385 (BE939_06585) - 1022865..1023995 (+) 1131 WP_000147743.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=177939 BE939_RS06355 WP_001696592.1 1018616..1019092(-) (radC) [Escherichia coli strain Ecol_AZ159]
MQQLSFLPGEMTPGERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLITGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=177939 BE939_RS06355 WP_001696592.1 1018616..1019092(-) (radC) [Escherichia coli strain Ecol_AZ159]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTACCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACCGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392