Detailed information NTG0177900

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE948_RS24140
• Genome accession: NZ_CP019005
• Coordinates: 4184513..4185505 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_AZ155
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4179513..4190505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE948_RS24115 (BE948_24750)	ygbN	4180169..4181533 (+)	1365	WP_000104429.1	GntP family transporter	-
BE948_RS24120 (BE948_24755)	-	4181572..4181808 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BE948_RS24125 (BE948_24760)	-	4181819..4183245 (-)	1427	Protein_3971	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BE948_RS24130 (BE948_24765)	-	4183245..4183838 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BE948_RS24135 (BE948_24770)	-	4183985..4184392 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
BE948_RS24140 (BE948_24775)	rpoS	4184513..4185505 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BE948_RS24145 (BE948_24780)	nlpD	4185568..4186662 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BE948_RS24150 (BE948_24785)	pcm	4186847..4187473 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BE948_RS24155 (BE948_24790)	surE	4187467..4188228 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BE948_RS24160 (BE948_24795)	truD	4188209..4189258 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BE948_RS24165 (BE948_24800)	ispF	4189255..4189734 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BE948_RS24170 (BE948_24805)	ispD	4189734..4190444 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=177900 BE948_RS24140 WP_000081550.1 4184513..4185505(-) (rpoS) [Escherichia coli strain Ecol_AZ155]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=177900 BE948_RS24140 WP_000081550.1 4184513..4185505(-) (rpoS) [Escherichia coli strain Ecol_AZ155]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715