Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GJ12_RS06850 Genome accession   NZ_CP015228
Coordinates   1156558..1157187 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 09-00049     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151558..1162187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ12_RS06825 (GJ12_05590) ycbZ 1151959..1153719 (-) 1761 WP_000156526.1 AAA family ATPase -
  GJ12_RS06830 (GJ12_05595) matP 1153905..1154357 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GJ12_RS06835 (GJ12_05600) ompA 1154433..1155473 (-) 1041 WP_000750416.1 porin OmpA -
  GJ12_RS06845 (GJ12_05610) sulA 1155830..1156339 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GJ12_RS06850 (GJ12_05615) sxy/tfoX 1156558..1157187 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GJ12_RS06855 (GJ12_05620) yccS 1157150..1159312 (-) 2163 WP_000875020.1 YccS family putative transporter -
  GJ12_RS06860 (GJ12_05625) yccF 1159322..1159768 (-) 447 WP_001261231.1 YccF domain-containing protein -
  GJ12_RS06865 (GJ12_05630) helD 1159891..1161945 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=177817 GJ12_RS06850 WP_000839153.1 1156558..1157187(+) (sxy/tfoX) [Escherichia coli strain 09-00049]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=177817 GJ12_RS06850 WP_000839153.1 1156558..1157187(+) (sxy/tfoX) [Escherichia coli strain 09-00049]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment