Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A4308_RS11960 Genome accession   NZ_CP015227
Coordinates   2514087..2514713 (+) Length   208 a.a.
NCBI ID   WP_032637053.1    Uniprot ID   A0AAJ6MNH4
Organism   Enterobacter sp. ODB01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509087..2519713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4308_RS11940 (A4308_11940) - 2509485..2511245 (-) 1761 WP_014883250.1 Lon protease family protein -
  A4308_RS11945 (A4308_11945) matP 2511432..2511884 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  A4308_RS11950 (A4308_11950) ompA 2511949..2513004 (-) 1056 WP_014883252.1 porin OmpA -
  A4308_RS11955 (A4308_11955) sulA 2513360..2513869 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  A4308_RS11960 (A4308_11960) sxy/tfoX 2514087..2514713 (+) 627 WP_032637053.1 TfoX/Sxy family DNA transformation protein Regulator
  A4308_RS11965 (A4308_11965) yccS 2514670..2516832 (-) 2163 WP_023332614.1 YccS family putative transporter -
  A4308_RS11970 (A4308_11970) - 2516852..2517298 (-) 447 WP_014883256.1 YccF domain-containing protein -
  A4308_RS11975 (A4308_11975) helD 2517422..2519476 (+) 2055 WP_045281285.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.53 Da        Isoelectric Point: 9.0691

>NTDB_id=177810 A4308_RS11960 WP_032637053.1 2514087..2514713(+) (sxy/tfoX) [Enterobacter sp. ODB01]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=177810 A4308_RS11960 WP_032637053.1 2514087..2514713(+) (sxy/tfoX) [Enterobacter sp. ODB01]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCCTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558

Multiple sequence alignment