Detailed information NTG0177772

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE940_RS12555
• Genome accession: NZ_CP019000
• Coordinates: 2015627..2016619 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_AZ153
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2010627..2021619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE940_RS12535 (BE940_12710)	ygbM	2011265..2012041 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
BE940_RS12540 (BE940_12715)	ygbN	2012130..2013494 (+)	1365	WP_000104433.1	GntP family transporter	-
BE940_RS12545 (BE940_12720)	-	2013637..2014680 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
BE940_RS12550 (BE940_12725)	-	2014905..2015456 (+)	552	WP_001179444.1	flavodoxin family protein	-
BE940_RS12555 (BE940_12730)	rpoS	2015627..2016619 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BE940_RS12560 (BE940_12735)	nlpD	2016682..2017776 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
BE940_RS12565 (BE940_12740)	pcm	2017961..2018587 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BE940_RS12570 (BE940_12745)	surE	2018581..2019342 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BE940_RS12575 (BE940_12750)	truD	2019323..2020372 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
BE940_RS12580 (BE940_12755)	ispF	2020369..2020848 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BE940_RS12585 (BE940_12760)	ispD	2020848..2021558 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=177772 BE940_RS12555 WP_000081550.1 2015627..2016619(-) (rpoS) [Escherichia coli strain Ecol_AZ153]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=177772 BE940_RS12555 WP_000081550.1 2015627..2016619(-) (rpoS) [Escherichia coli strain Ecol_AZ153]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715