Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   A4A60_RS16660 Genome accession   NZ_CP015222
Coordinates   3130392..3131036 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain HRBS-10TDI13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125392..3136036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4A60_RS16625 (A4A60_16635) mrpB 3126584..3127015 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  A4A60_RS16630 (A4A60_16640) mrpC 3127015..3127356 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  A4A60_RS16635 (A4A60_16645) mrpD 3127349..3128830 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  A4A60_RS16640 (A4A60_16650) mrpE 3128836..3129312 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  A4A60_RS16645 (A4A60_16655) mrpF 3129312..3129596 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  A4A60_RS16650 (A4A60_16660) mnhG 3129580..3129954 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  A4A60_RS16655 (A4A60_16665) yuxO 3129993..3130373 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  A4A60_RS16660 (A4A60_16670) comA 3130392..3131036 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  A4A60_RS16665 (A4A60_16675) comP 3131117..3133429 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  A4A60_RS16670 (A4A60_16680) comX 3133445..3133666 (-) 222 WP_014480704.1 competence pheromone ComX -
  A4A60_RS16675 (A4A60_16685) - 3133668..3134531 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  A4A60_RS16680 (A4A60_16690) degQ 3134716..3134856 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  A4A60_RS23140 - 3135078..3135203 (+) 126 WP_003228793.1 hypothetical protein -
  A4A60_RS16685 (A4A60_16695) - 3135318..3135686 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=177677 A4A60_RS16660 WP_003220716.1 3130392..3131036(-) (comA) [Bacillus subtilis strain HRBS-10TDI13]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=177677 A4A60_RS16660 WP_003220716.1 3130392..3131036(-) (comA) [Bacillus subtilis strain HRBS-10TDI13]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment