Detailed information NTG0177675

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE962_RS04925
• Genome accession: NZ_CP018995
• Coordinates: 485601..486593 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_AZ147
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 480601..491593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE962_RS04895 (BE962_05035)	ispD	480662..481372 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BE962_RS04900 (BE962_05040)	ispF	481372..481851 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BE962_RS04905 (BE962_05045)	truD	481848..482897 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BE962_RS04910 (BE962_05050)	surE	482878..483639 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BE962_RS04915 (BE962_05055)	pcm	483633..484259 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BE962_RS04920 (BE962_05060)	nlpD	484444..485538 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BE962_RS04925 (BE962_05065)	rpoS	485601..486593 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BE962_RS04930 (BE962_05070)	ygbN	486687..488051 (-)	1365	WP_000104441.1	GntP family transporter	-
BE962_RS04935 (BE962_05075)	ygbM	488140..488916 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BE962_RS04940 (BE962_05080)	ygbL	488921..489559 (-)	639	WP_001278994.1	aldolase	-
BE962_RS04945 (BE962_05085)	otnK	489556..490818 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=177675 BE962_RS04925 WP_000081550.1 485601..486593(+) (rpoS) [Escherichia coli strain Ecol_AZ147]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=177675 BE962_RS04925 WP_000081550.1 485601..486593(+) (rpoS) [Escherichia coli strain Ecol_AZ147]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715