Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   A4A60_RS14665 Genome accession   NZ_CP015222
Coordinates   2734934..2735680 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain HRBS-10TDI13     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2729934..2740680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4A60_RS14640 (A4A60_14650) mreC 2730340..2731212 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  A4A60_RS14645 (A4A60_14655) mreB 2731243..2732256 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  A4A60_RS14650 (A4A60_14660) radC 2732348..2733043 (-) 696 WP_014480455.1 DNA repair protein RadC -
  A4A60_RS14655 (A4A60_14665) maf 2733080..2733649 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  A4A60_RS14660 (A4A60_14670) spoIIB 2733802..2734800 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  A4A60_RS14665 (A4A60_14675) comC 2734934..2735680 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  A4A60_RS14670 (A4A60_14680) folC 2735820..2737112 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  A4A60_RS14675 (A4A60_14685) valS 2737172..2739814 (-) 2643 WP_014480461.1 valine--tRNA ligase -
  A4A60_RS14680 (A4A60_14690) - 2740262..2740453 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=177672 A4A60_RS14665 WP_072592551.1 2734934..2735680(-) (comC) [Bacillus subtilis strain HRBS-10TDI13]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=177672 A4A60_RS14665 WP_072592551.1 2734934..2735680(-) (comC) [Bacillus subtilis strain HRBS-10TDI13]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment