Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   A4A60_RS08250 Genome accession   NZ_CP015222
Coordinates   1580866..1581441 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain HRBS-10TDI13     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575866..1586441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4A60_RS08220 (A4A60_08230) dapD 1576054..1576764 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  A4A60_RS08225 (A4A60_08235) dapI 1576834..1577958 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  A4A60_RS08230 (A4A60_08240) ykuS 1578020..1578265 (+) 246 WP_003232382.1 YkuS family protein -
  A4A60_RS08235 (A4A60_08245) mscT 1578302..1579105 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  A4A60_RS08240 (A4A60_08250) ahpA 1579342..1579884 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  A4A60_RS08245 (A4A60_08255) ykuV 1579954..1580400 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  A4A60_RS08250 (A4A60_08260) rok 1580866..1581441 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  A4A60_RS08265 (A4A60_08275) cse15 1582772..1583737 (-) 966 WP_014479669.1 spore protein Cse15 -
  A4A60_RS08270 (A4A60_08280) mobA 1583874..1584473 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  A4A60_RS08275 (A4A60_08285) moeB 1584524..1585543 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=177646 A4A60_RS08250 WP_003232378.1 1580866..1581441(+) (rok) [Bacillus subtilis strain HRBS-10TDI13]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=177646 A4A60_RS08250 WP_003232378.1 1580866..1581441(+) (rok) [Bacillus subtilis strain HRBS-10TDI13]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment