Detailed information NTG0177604

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE932_RS11415
• Genome accession: NZ_CP018991
• Coordinates: 1748894..1749886 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_AZ146
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1743894..1754886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE932_RS11395 (BE932_11645)	ygbM	1744532..1745308 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
BE932_RS11400 (BE932_11650)	ygbN	1745397..1746761 (+)	1365	WP_000104433.1	GntP family transporter	-
BE932_RS11405 (BE932_11655)	-	1746904..1747947 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
BE932_RS11410 (BE932_11660)	-	1748172..1748723 (+)	552	WP_001179444.1	flavodoxin family protein	-
BE932_RS11415 (BE932_11665)	rpoS	1748894..1749886 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BE932_RS11420 (BE932_11670)	nlpD	1749949..1751043 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
BE932_RS11425 (BE932_11675)	pcm	1751228..1751854 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BE932_RS11430 (BE932_11680)	surE	1751848..1752609 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BE932_RS11435 (BE932_11685)	truD	1752590..1753639 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
BE932_RS11440 (BE932_11690)	ispF	1753636..1754115 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BE932_RS11445 (BE932_11695)	ispD	1754115..1754825 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=177604 BE932_RS11415 WP_000081550.1 1748894..1749886(-) (rpoS) [Escherichia coli strain Ecol_AZ146]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=177604 BE932_RS11415 WP_000081550.1 1748894..1749886(-) (rpoS) [Escherichia coli strain Ecol_AZ146]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715