Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BE932_RS07325 Genome accession   NZ_CP018991
Coordinates   928459..929883 (+) Length   474 a.a.
NCBI ID   WP_001576845.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ146     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 923459..934883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE932_RS07275 (BE932_07450) - 923578..923871 (+) 294 WP_001111298.1 phage anti-RecBCD protein -
  BE932_RS07280 (BE932_07455) - 923882..924049 (+) 168 Protein_1003 DUF2737 family protein -
  BE932_RS32100 - 924046..924288 (+) 243 Protein_1004 ead/Ea22-like family protein -
  BE932_RS07290 (BE932_07465) - 924410..925006 (+) 597 WP_029700889.1 ead/Ea22-like family protein -
  BE932_RS07295 (BE932_07470) - 924999..925190 (+) 192 WP_029700887.1 hypothetical protein -
  BE932_RS31750 - 925329..925457 (+) 129 Protein_1007 DUF550 domain-containing protein -
  BE932_RS07300 (BE932_07475) - 925509..926126 (+) 618 WP_229020449.1 dATP/dGTP pyrophosphohydrolase domain-containing protein -
  BE932_RS07305 (BE932_07480) - 926223..926402 (+) 180 WP_001277766.1 Eag protein -
  BE932_RS07310 (BE932_07485) - 926503..926847 (+) 345 WP_029700883.1 hypothetical protein -
  BE932_RS07315 (BE932_07490) - 926927..927118 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  BE932_RS07320 (BE932_07495) - 927099..928277 (-) 1179 WP_029700882.1 site-specific integrase -
  BE932_RS07325 (BE932_07500) sbcB 928459..929883 (+) 1425 WP_001576845.1 exodeoxyribonuclease I Machinery gene
  BE932_RS07335 (BE932_07510) tnpA 929994..930452 (-) 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -
  BE932_RS07345 (BE932_07520) plaP 930669..932027 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  BE932_RS30765 yoeI 932017..932079 (-) 63 WP_010723108.1 membrane protein YoeI -
  BE932_RS07350 (BE932_07525) yeeY 932294..933223 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BE932_RS07355 (BE932_07530) yeeZ 933269..934093 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  BE932_RS07360 (BE932_07535) yoeB 934176..934430 (-) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  BE932_RS07365 (BE932_07540) yefM 934427..934678 (-) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54334.56 Da        Isoelectric Point: 5.3476

>NTDB_id=177591 BE932_RS07325 WP_001576845.1 928459..929883(+) (sbcB) [Escherichia coli strain Ecol_AZ146]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=177591 BE932_RS07325 WP_001576845.1 928459..929883(+) (sbcB) [Escherichia coli strain Ecol_AZ146]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTAGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTTTGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586

Multiple sequence alignment