Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE932_RS06690 Genome accession   NZ_CP018991
Coordinates   844456..844932 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_AZ146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839456..849932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE932_RS06655 (BE932_06815) istB 840984..841730 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  BE932_RS06660 (BE932_06820) - 841813..842163 (+) 351 Protein_881 hypothetical protein -
  BE932_RS06665 (BE932_06825) - 842179..842589 (+) 411 WP_000846703.1 hypothetical protein -
  BE932_RS06675 (BE932_06830) - 842810..843628 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  BE932_RS06680 (BE932_06835) - 843628..843873 (+) 246 WP_001164966.1 hypothetical protein -
  BE932_RS06685 (BE932_06840) - 843967..844440 (+) 474 WP_001542276.1 antirestriction protein -
  BE932_RS06690 (BE932_06845) radC 844456..844932 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  BE932_RS06695 (BE932_06850) - 844995..845216 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  BE932_RS06700 (BE932_06855) - 845624..846271 (-) 648 WP_001573286.1 helix-turn-helix domain-containing protein -
  BE932_RS06705 (BE932_06860) - 846440..846676 (+) 237 WP_000989761.1 helix-turn-helix domain-containing protein -
  BE932_RS06710 (BE932_06865) - 846676..848718 (+) 2043 WP_060589422.1 Mu transposase C-terminal domain-containing protein -
  BE932_RS06715 (BE932_06870) - 848737..849630 (+) 894 WP_060589421.1 AAA family ATPase -
  BE932_RS06720 (BE932_06875) - 849645..849869 (+) 225 WP_000361028.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=177590 BE932_RS06690 WP_001186200.1 844456..844932(+) (radC) [Escherichia coli strain Ecol_AZ146]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=177590 BE932_RS06690 WP_001186200.1 844456..844932(+) (radC) [Escherichia coli strain Ecol_AZ146]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment