Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CJJRM1285_RS05900 Genome accession   NZ_CP015209
Coordinates   1127548..1128507 (+) Length   319 a.a.
NCBI ID   WP_002856368.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain RM1285     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1109865..1137844 1127548..1128507 within 0


Gene organization within MGE regions


Location: 1109865..1137844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM1285_RS05810 (CjjRM1285_1145) pglI 1109865..1110794 (-) 930 WP_002856262.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  CJJRM1285_RS05815 (CjjRM1285_1146) pglH 1110787..1111866 (-) 1080 WP_002911763.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  CJJRM1285_RS05820 (CjjRM1285_1147) pglK 1111863..1113557 (-) 1695 WP_002856016.1 ABC-type lipopolysaccharide transporter PglK -
  CJJRM1285_RS05825 (CjjRM1285_1148) galE 1113551..1114537 (-) 987 WP_002856461.1 UDP-glucose 4-epimerase GalE -
  CJJRM1285_RS05830 (CjjRM1285_1149) - 1114595..1115389 (-) 795 WP_002856546.1 3'-5' exonuclease -
  CJJRM1285_RS05835 (CjjRM1285_1150) waaC 1115455..1116483 (+) 1029 WP_052822536.1 lipopolysaccharide heptosyltransferase I -
  CJJRM1285_RS05840 (CjjRM1285_1151) htrB 1116473..1117360 (+) 888 WP_002855840.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  CJJRM1285_RS05845 (CjjRM1285_1152) - 1117357..1118905 (+) 1549 Protein_1133 glycosyltransferase family 2 protein -
  CJJRM1285_RS05855 (CjjRM1285_1153) - 1118909..1120078 (+) 1170 WP_002852863.1 glycosyltransferase family 2 protein -
  CJJRM1285_RS05860 (CjjRM1285_1154) - 1120148..1121191 (+) 1044 WP_002912176.1 beta-1,4-N-acetylgalactosaminyltransferase -
  CJJRM1285_RS05865 (CjjRM1285_1155) - 1121177..1122082 (-) 906 WP_002852740.1 glycosyltransferase family 2 protein -
  CJJRM1285_RS05870 (CjjRM1285_1156) - 1122171..1123046 (+) 876 WP_002869021.1 alpha-2,3-sialyltransferase -
  CJJRM1285_RS05875 (CjjRM1285_1157) neuB 1123047..1124087 (+) 1041 WP_002870496.1 N-acetylneuraminate synthase -
  CJJRM1285_RS05880 (CjjRM1285_1158) neuC 1124084..1125202 (+) 1119 WP_002911676.1 UDP-N-acetylglucosamine 2-epimerase -
  CJJRM1285_RS05885 (CjjRM1285_1159) - 1125199..1125864 (+) 666 WP_002855897.1 cytidylyltransferase domain-containing protein -
  CJJRM1285_RS05890 (CjjRM1285_1160) - 1125987..1126685 (+) 699 WP_236841646.1 CatB-related O-acetyltransferase -
  CJJRM1285_RS05895 (CjjRM1285_1161) waaV 1126677..1127489 (-) 813 WP_002856066.1 glycosyltransferase family 2 protein -
  CJJRM1285_RS05900 (CjjRM1285_1162) waaF 1127548..1128507 (+) 960 WP_002856368.1 lipopolysaccharide heptosyltransferase II Regulator
  CJJRM1285_RS05905 (CjjRM1285_1163) gmhA 1128488..1129048 (-) 561 WP_002855785.1 D-sedoheptulose 7-phosphate isomerase -
  CJJRM1285_RS05910 (CjjRM1285_1164) rfaE1 1129045..1130430 (-) 1386 WP_002856251.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CJJRM1285_RS05915 (CjjRM1285_1165) rfaD 1130423..1131376 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  CJJRM1285_RS05920 (CjjRM1285_1166) gmhB 1131377..1131937 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  CJJRM1285_RS05925 (CjjRM1285_1167) - 1132019..1132321 (+) 303 WP_002852762.1 c-type cytochrome -
  CJJRM1285_RS05930 (CjjRM1285_1168) ccoS 1132344..1132550 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  CJJRM1285_RS05935 (CjjRM1285_1169) - 1132547..1134904 (-) 2358 WP_079254191.1 heavy metal translocating P-type ATPase -
  CJJRM1285_RS05940 (CjjRM1285_1170) rho 1135013..1136311 (+) 1299 WP_002853705.1 transcription termination factor Rho -
  CJJRM1285_RS05945 (CjjRM1285_1171) dnaX 1136315..1137844 (+) 1530 WP_002855902.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36719.17 Da        Isoelectric Point: 10.1941

>NTDB_id=177577 CJJRM1285_RS05900 WP_002856368.1 1127548..1128507(+) (waaF) [Campylobacter jejuni subsp. jejuni strain RM1285]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=177577 CJJRM1285_RS05900 WP_002856368.1 1127548..1128507(+) (waaF) [Campylobacter jejuni subsp. jejuni strain RM1285]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAACTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.611

100

0.956

Multiple sequence alignment