Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE928_RS23120 Genome accession   NZ_CP018983
Coordinates   4310408..4310884 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain Ecol_867     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4305408..4315884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE928_RS26740 (BE928_23615) - 4305766..4306016 (+) 251 Protein_4137 transposase -
  BE928_RS23095 (BE928_23620) - 4306295..4307170 (+) 876 Protein_4138 PTS ascorbate transporter subunit IIC -
  BE928_RS27600 - 4307469..4307669 (-) 201 Protein_4139 transposase -
  BE928_RS23105 (BE928_23635) - 4307944..4308369 (+) 426 WP_000422741.1 transposase -
  BE928_RS23110 (BE928_23640) tnpB 4308366..4308716 (+) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  BE928_RS23115 (BE928_23645) - 4308747..4310360 (+) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -
  BE928_RS23120 (BE928_23650) radC 4310408..4310884 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  BE928_RS23125 (BE928_23655) - 4310947..4311168 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  BE928_RS23135 (BE928_23665) - 4311331..4311699 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE928_RS23140 (BE928_23670) - 4311789..4312166 (+) 378 WP_000854759.1 TA system toxin CbtA family protein -
  BE928_RS23145 (BE928_23675) - 4312163..4312651 (+) 489 WP_000761690.1 DUF5983 family protein -
  BE928_RS23150 (BE928_23680) - 4312668..4312844 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  BE928_RS27015 - 4312950..4313099 (+) 150 Protein_4149 hypothetical protein -
  BE928_RS27785 - 4313069..4313203 (+) 135 Protein_4150 transcriptional regulator -
  BE928_RS27680 (BE928_23685) - 4313466..4313771 (+) 306 Protein_4151 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=177573 BE928_RS23120 WP_001186775.1 4310408..4310884(+) (radC) [Escherichia coli strain Ecol_867]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=177573 BE928_RS23120 WP_001186775.1 4310408..4310884(+) (radC) [Escherichia coli strain Ecol_867]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399