Detailed information NTG0177530

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BE928_RS13670
• Genome accession: NZ_CP018983
• Coordinates: 2445086..2446078 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain Ecol_867
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2440086..2451078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE928_RS13650 (BE928_13890)	ygbM	2440724..2441500 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
BE928_RS13655 (BE928_13895)	ygbN	2441589..2442953 (+)	1365	WP_000104433.1	GntP family transporter	-
BE928_RS13660 (BE928_13900)	-	2443096..2444139 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
BE928_RS13665 (BE928_13905)	-	2444364..2444915 (+)	552	WP_001179444.1	flavodoxin family protein	-
BE928_RS13670 (BE928_13910)	rpoS	2445086..2446078 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BE928_RS13675 (BE928_13915)	nlpD	2446141..2447235 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
BE928_RS13680 (BE928_13920)	pcm	2447420..2448046 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BE928_RS13685 (BE928_13925)	surE	2448040..2448801 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BE928_RS13690 (BE928_13930)	truD	2448782..2449831 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
BE928_RS13695 (BE928_13935)	ispF	2449828..2450307 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BE928_RS13700 (BE928_13940)	ispD	2450307..2451017 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=177530 BE928_RS13670 WP_000081550.1 2445086..2446078(-) (rpoS) [Escherichia coli strain Ecol_867]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=177530 BE928_RS13670 WP_000081550.1 2445086..2446078(-) (rpoS) [Escherichia coli strain Ecol_867]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715