Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   SporoP8_RS00405 Genome accession   NZ_CP015207
Coordinates   71911..73611 (+) Length   566 a.a.
NCBI ID   WP_085130504.1    Uniprot ID   -
Organism   Sporosarcina ureae strain P8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66911..78611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SporoP8_RS00380 (SporoP8_00375) - 67388..67630 (+) 243 WP_085130496.1 exodeoxyribonuclease VII small subunit -
  SporoP8_RS00385 (SporoP8_00380) - 67623..68507 (+) 885 WP_085130498.1 polyprenyl synthetase family protein -
  SporoP8_RS00390 (SporoP8_00385) dxs 68650..70548 (+) 1899 WP_085133511.1 1-deoxy-D-xylulose-5-phosphate synthase -
  SporoP8_RS00395 (SporoP8_00390) - 70545..71366 (+) 822 WP_085130500.1 TlyA family RNA methyltransferase -
  SporoP8_RS00400 (SporoP8_00395) ahrC 71444..71893 (+) 450 WP_085130502.1 transcriptional regulator AhrC/ArgR -
  SporoP8_RS00405 (SporoP8_00400) recN 71911..73611 (+) 1701 WP_085130504.1 DNA repair protein RecN Machinery gene
  SporoP8_RS00410 (SporoP8_00405) - 73722..74675 (+) 954 WP_085130506.1 SpoIVB peptidase S55 domain-containing protein -
  SporoP8_RS00415 (SporoP8_00410) spo0A 74900..75694 (+) 795 WP_085130508.1 sporulation transcription factor Spo0A -
  SporoP8_RS00420 (SporoP8_00415) - 76228..77781 (+) 1554 WP_085130510.1 DUF342 domain-containing protein -
  SporoP8_RS00425 (SporoP8_00420) - 77774..78493 (+) 720 WP_085130512.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64124.28 Da        Isoelectric Point: 4.8978

>NTDB_id=177521 SporoP8_RS00405 WP_085130504.1 71911..73611(+) (recN) [Sporosarcina ureae strain P8]
MLSELSIKNFAIIEQLEIAFDDGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELQGLFTIDKNIENVMGK
LTEFGIDTEEGIVILRRDISASGKSVCRVNGKLVTIAILREIGALLIDIHGQHENQELMNEKRHIHLLDFFIGEPIERAM
ATYTELYDKYKKLTQLIAAKTQDEQQIAQKIDLYKFQLEEIDAANLRIGEEEELESELVKLQHFNRLFDRLNTSYEALSL
ESHGLDWVGNSMSDLEEAASIDEDLKTMSETVNSSFYALQDVSHDLKRMIDGMEFQPDRLEFVEDRLALFLTLKRKYGKS
LEDILIYRDKIADALDQLVNRDERLHQNQELLAQYVEDLEIEANELSIIRKKAALSLEKGIEEQLKQLYMEKATFKVQIH
QKQPRQFDANGFDEVVFMISTNLGEPLKPLVRVASGGELSRMMLALKTIFSQHQGVTSIIFDEVDTGVSGRVAQSIAEKI
SMISSHSQVLCISHLPQVAAMADHHYLIKKEVHDGRTTTAIHDVMKTERTEELSRMLSGAEITTLTLQHAEELLVLADQR
KKEFRK

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=177521 SporoP8_RS00405 WP_085130504.1 71911..73611(+) (recN) [Sporosarcina ureae strain P8]
TTGTTAAGCGAACTTTCTATTAAAAACTTTGCTATTATTGAACAACTTGAAATCGCGTTTGACGATGGTCTAACGGTGCT
GACTGGCGAAACGGGTGCTGGGAAGTCCATTATTATTGATGCTGTCCAGCTACTCGCTGGCGGCCGTGGTTCACAGGAAT
TCATTCGCCACGGTGCGAAAAAAGCTGAGCTTCAGGGACTTTTCACGATCGATAAAAATATTGAAAATGTGATGGGGAAG
TTGACTGAATTTGGCATTGATACAGAAGAAGGTATTGTGATTTTACGCCGGGATATTAGTGCCAGCGGGAAATCCGTTTG
TCGCGTCAATGGGAAACTCGTAACAATTGCTATATTGCGTGAGATCGGCGCATTGCTGATCGATATCCATGGACAACACG
AAAACCAAGAATTAATGAATGAAAAGCGTCATATTCATTTGCTCGATTTCTTTATTGGTGAGCCGATTGAACGTGCGATG
GCAACATATACCGAGTTATATGATAAATATAAAAAACTCACACAACTCATTGCGGCTAAAACGCAAGATGAACAGCAAAT
TGCGCAGAAAATCGATTTGTACAAATTCCAATTAGAAGAAATCGATGCAGCGAATTTACGGATCGGTGAAGAAGAGGAAT
TGGAGTCTGAACTTGTAAAGCTGCAGCATTTTAATCGGTTATTTGATCGCTTGAATACTTCATATGAAGCATTGTCTTTA
GAGTCGCATGGACTCGATTGGGTTGGTAATTCGATGAGTGATCTCGAAGAAGCAGCTTCGATCGATGAAGATCTTAAAAC
GATGTCTGAAACAGTTAATTCTTCGTTTTACGCGCTTCAAGACGTTTCACATGATTTAAAAAGGATGATTGATGGTATGG
AATTCCAGCCAGATCGTTTGGAATTTGTCGAGGATCGATTAGCCTTGTTTTTAACATTGAAGCGAAAGTATGGGAAATCA
CTAGAAGATATTTTGATTTATCGCGATAAAATTGCTGACGCACTTGATCAATTGGTCAATCGTGACGAAAGATTGCATCA
AAACCAAGAATTATTGGCACAATACGTAGAAGACCTTGAAATAGAAGCAAATGAATTATCAATTATCCGAAAAAAAGCGG
CTCTTTCTCTTGAAAAAGGAATTGAAGAGCAGTTGAAGCAGTTGTACATGGAAAAGGCCACCTTCAAAGTGCAAATTCAC
CAAAAGCAACCTCGTCAATTCGATGCCAACGGATTTGATGAAGTGGTATTTATGATTTCCACAAACTTGGGTGAACCGCT
TAAACCTTTAGTACGAGTGGCGTCTGGTGGCGAATTATCTCGAATGATGCTGGCACTAAAAACGATTTTTTCTCAACATC
AAGGTGTCACATCGATTATTTTCGATGAAGTCGATACCGGAGTTAGTGGGCGCGTAGCACAGTCTATTGCGGAAAAAATT
TCTATGATCTCCAGCCACTCTCAAGTACTATGTATTTCGCATTTACCTCAAGTGGCCGCAATGGCAGATCATCATTACCT
CATCAAAAAAGAAGTGCATGATGGCCGTACAACTACGGCGATTCATGATGTGATGAAAACAGAACGTACGGAAGAATTAT
CACGCATGCTTTCGGGTGCAGAAATTACGACGTTGACTCTTCAGCATGCTGAAGAACTTTTGGTTTTAGCCGATCAACGC
AAAAAGGAATTCCGTAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.484

100

0.542

Multiple sequence alignment