Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KKK_RS18125 Genome accession   NZ_CP015202
Coordinates   4009007..4009642 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida B6-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4004007..4014642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKK_RS18095 (KKK_18095) murB 4005104..4006123 (-) 1020 WP_003247146.1 UDP-N-acetylmuramate dehydrogenase -
  KKK_RS18100 (KKK_18100) - 4006120..4006584 (-) 465 WP_019752229.1 low molecular weight protein-tyrosine-phosphatase -
  KKK_RS18105 (KKK_18105) kdsB 4006584..4007348 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KKK_RS18110 (KKK_18110) - 4007345..4007530 (-) 186 WP_003247142.1 Trm112 family protein -
  KKK_RS18115 (KKK_18115) lpxK 4007575..4008576 (-) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  KKK_RS18120 (KKK_18120) - 4008576..4009010 (-) 435 WP_014859651.1 ExbD/TolR family protein -
  KKK_RS18125 (KKK_18125) exbB 4009007..4009642 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KKK_RS18130 (KKK_18130) comA 4009798..4012014 (-) 2217 WP_019752230.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KKK_RS29910 - 4012157..4012663 (+) 507 Protein_3636 DUF2062 domain-containing protein -
  KKK_RS18135 (KKK_18135) - 4012673..4013452 (-) 780 WP_003247128.1 ABC transporter permease -
  KKK_RS18140 (KKK_18140) - 4013449..4014381 (-) 933 WP_019752231.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=177488 KKK_RS18125 WP_003247132.1 4009007..4009642(-) (exbB) [Pseudomonas putida B6-2]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=177488 KKK_RS18125 WP_003247132.1 4009007..4009642(-) (exbB) [Pseudomonas putida B6-2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTATAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment