Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A4H00_RS03065 Genome accession   NZ_CP015196
Coordinates   602531..603892 (-) Length   453 a.a.
NCBI ID   WP_067087144.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597531..608892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS03040 - 598692..599375 (-) 684 WP_067087131.1 LiaF transmembrane domain-containing protein -
  A4H00_RS03045 - 599380..599826 (-) 447 WP_067087134.1 LytTR family DNA-binding domain-containing protein -
  A4H00_RS03050 - 599993..600634 (-) 642 WP_067087136.1 ribonuclease P -
  A4H00_RS03055 - 600671..601426 (-) 756 WP_067087139.1 TIGR00266 family protein -
  A4H00_RS03060 - 601857..602351 (-) 495 WP_067087142.1 beta-class carbonic anhydrase -
  A4H00_RS03065 radA 602531..603892 (-) 1362 WP_067087144.1 DNA repair protein RadA Machinery gene
  A4H00_RS03070 - 603895..604338 (-) 444 WP_067087147.1 dUTP diphosphatase -
  A4H00_RS03075 - 604473..604751 (+) 279 WP_067087148.1 hypothetical protein -
  A4H00_RS03080 - 604876..606639 (-) 1764 WP_067087152.1 ABC transporter ATP-binding protein -
  A4H00_RS03085 - 606640..608349 (-) 1710 WP_067087155.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49288.62 Da        Isoelectric Point: 5.2526

>NTDB_id=177419 A4H00_RS03065 WP_067087144.1 602531..603892(-) (radA) [Streptococcus marmotae strain HTS5]
MAKKKATFVCQNCDYHSPKYLGRCPNCGAWSSFVEEIEVAEVKNARVSLTGEKTKPVKLNQVTSIDVARTETDMAEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQSIRTEIE
KIQPDFLIIDSIQTIMSPEISSVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKIYAPQNSLVGLEIPAGIEIVGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=177419 A4H00_RS03065 WP_067087144.1 602531..603892(-) (radA) [Streptococcus marmotae strain HTS5]
ATGGCAAAGAAAAAAGCAACCTTTGTCTGTCAGAATTGTGACTACCATTCTCCCAAATATTTGGGGCGTTGTCCCAACTG
TGGGGCATGGTCGTCTTTTGTAGAGGAAATTGAGGTCGCTGAGGTCAAAAATGCCCGTGTTTCTTTAACGGGTGAAAAGA
CCAAGCCCGTTAAACTCAATCAAGTAACGTCAATCGATGTTGCTCGAACTGAGACAGATATGGCAGAATTCAACCGTGTT
TTAGGTGGTGGCGTGGTGCCAGGGAGTCTCGTCTTGATTGGTGGGGATCCAGGGATTGGCAAATCAACCTTGCTCTTGCA
AGTTTCGACTCAATTAGCTAGTCGAGGAACCGTTCTGTATGTGAGTGGTGAGGAGTCTGCTGAGCAAATCAAATTGCGGA
GTGAACGGCTCGGTGATATTGATAATGAATTTTATCTCTACGCTGAGACCAATATGCAAAGTATTCGGACAGAGATTGAG
AAGATTCAGCCTGATTTTCTGATTATTGACTCTATCCAGACCATTATGAGTCCAGAGATTTCAAGTGTGCAAGGGTCGGT
CAGTCAAGTGCGAGAAGTGACGGCGGAGCTGATGCAGATTGCGAAAACCAATAACATTGCGACCTTTATTGTAGGGCATG
TGACTAAGGAAGGTACGCTTGCAGGTCCTCGGATGCTAGAGCACATGGTGGACACCGTGCTCTATTTTGAGGGAGAGCGG
CAGCATACCTTCCGTATCTTGCGTGCCGTTAAAAATCGTTTTGGCTCTACCAACGAAATTGGGATATTTGAGATGCAATC
AGCAGGATTAGTCGAGGTACTTAATCCCAGTCAAGTCTTTTTAGAAGAGCGCTTGGATGGTGCGACCGGATCAGCCATTG
TCGTTACGATGGAAGGCACACGCCCTATTTTAGCAGAAGTACAAGCCTTGGTGACACCAACCATGTTCGGTAATGCCAAG
CGGACGACAACAGGGCTTGATTTTAATCGGGCTAGTCTCATCATGGCGGTCTTGGAAAAACGGGCTGGTTTATTGCTCCA
AAACCAAGATGCCTATCTCAAGTCAGCTGGGGGTGTCAAGCTAGATGAGCCGGCAATTGATTTGGCGGTTGCGGTTGCGA
TTGCTTCTAGTTACAAGGATAAGCCAACCAATCCCCAAGAATGTTTTATCGGTGAAATTGGCTTAACAGGGGAAATCCGC
CGTGTCAACCGTATTGAACAACGAATCAATGAAGCAGCCAAGTTAGGTTTTACTAAAATTTATGCTCCCCAAAATTCTCT
TGTTGGTCTTGAAATTCCAGCAGGAATTGAGATTGTTGGAGTGACGACAATCGGCGAAGTGCTGAAGAAAGTGTTTGGTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.779

0.907
  radA Streptococcus pneumoniae D39

90.708

99.779

0.905
  radA Streptococcus pneumoniae R6

90.708

99.779

0.905
  radA Streptococcus pneumoniae Rx1

90.708

99.779

0.905
  radA Streptococcus mitis SK321

90.708

99.779

0.905
  radA Streptococcus pneumoniae TIGR4

90.708

99.779

0.905
  radA Bacillus subtilis subsp. subtilis str. 168

62.363

100

0.629

Multiple sequence alignment