Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   A4H00_RS01450 Genome accession   NZ_CP015196
Coordinates   296036..296770 (-) Length   244 a.a.
NCBI ID   WP_067086448.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   export ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 279987..302534 296036..296770 within 0


Gene organization within MGE regions


Location: 279987..302534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS01370 - 279987..281051 (-) 1065 WP_067086407.1 methionine ABC transporter ATP-binding protein -
  A4H00_RS01375 - 281044..282411 (-) 1368 WP_067086409.1 M20/M25/M40 family metallo-hydrolase -
  A4H00_RS01380 - 282597..283451 (-) 855 WP_067086412.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  A4H00_RS01385 - 283587..283934 (-) 348 WP_067086414.1 hypothetical protein -
  A4H00_RS01390 - 283947..284240 (-) 294 WP_067086418.1 hypothetical protein -
  A4H00_RS01395 - 284431..285120 (-) 690 WP_067086421.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A4H00_RS01400 metE 285426..287681 (+) 2256 WP_067086424.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  A4H00_RS01405 metF 287732..288595 (+) 864 WP_067086427.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  A4H00_RS01410 mnmE 288665..290038 (+) 1374 WP_067086429.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  A4H00_RS01415 - 290268..291170 (+) 903 WP_067086432.1 hypothetical protein -
  A4H00_RS01420 - 291350..291817 (+) 468 WP_082815568.1 NUDIX hydrolase -
  A4H00_RS01425 - 291948..292418 (+) 471 WP_067086435.1 GNAT family N-acetyltransferase -
  A4H00_RS01430 - 292480..292800 (+) 321 WP_167541366.1 NUDIX hydrolase -
  A4H00_RS01435 trmB 293517..294152 (-) 636 WP_067086440.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A4H00_RS01440 ccrZ 294149..294943 (-) 795 WP_067086443.1 cell cycle regulator CcrZ -
  A4H00_RS01445 - 294993..296039 (-) 1047 WP_067086446.1 ABC transporter permease -
  A4H00_RS01450 pptA 296036..296770 (-) 735 WP_067086448.1 ABC transporter ATP-binding protein Regulator
  A4H00_RS01455 - 296833..297249 (+) 417 WP_067086450.1 HIT family protein -
  A4H00_RS01460 - 297246..297536 (+) 291 WP_067086452.1 chemotaxis protein -
  A4H00_RS01465 recG 297864..299879 (-) 2016 WP_067091366.1 ATP-dependent DNA helicase RecG -
  A4H00_RS01470 - 300122..300379 (+) 258 Protein_290 helix-turn-helix domain-containing protein -
  A4H00_RS01480 - 300451..301556 (+) 1106 WP_099092148.1 IS3 family transposase -
  A4H00_RS01485 - 301600..302259 (+) 660 Protein_292 IS30 family transposase -
  A4H00_RS11975 - 302322..302534 (+) 213 WP_237334205.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27094.53 Da        Isoelectric Point: 4.6439

>NTDB_id=177412 A4H00_RS01450 WP_067086448.1 296036..296770(-) (pptA) [Streptococcus marmotae strain HTS5]
MLEVKNVTGGYVNIPVLKDISFQVADGELVGLIGLNGAGKSTTIKEIIGLLSPYKGQILIDGESLQSDPQAYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLDVEQALSRAQKLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVNPSLLIVDEPF
LGLDPVAIDDLIRLLEEEKAKGTSILMSTHVLDSAEKMCDRFVILHQGQVRAQGDLATLQAEFGRKEASLNELYLALTKE
GEQV

Nucleotide


Download         Length: 735 bp        

>NTDB_id=177412 A4H00_RS01450 WP_067086448.1 296036..296770(-) (pptA) [Streptococcus marmotae strain HTS5]
ATGTTAGAAGTAAAAAATGTAACAGGTGGTTATGTCAATATTCCTGTTTTGAAAGATATTTCCTTTCAAGTAGCAGATGG
AGAATTGGTCGGTTTGATTGGCCTTAATGGTGCAGGAAAATCGACGACAATTAAAGAGATTATCGGTCTCTTATCACCAT
ACAAAGGACAGATTTTGATTGACGGAGAGAGCCTTCAGTCGGATCCACAAGCCTATCGGAAAAAGATCGGTTTTATTCCA
GAAACACCCAGCCTCTATGAAGAGCTGACCTTAAAAGAGCATTTGGAAGTGGTGGCCATGGCCTATGATTTGGATGTCGA
ACAGGCCCTTTCTCGCGCGCAAAAATTGCTCAAACTCTTTCGCTTGGATGAAAAACTGGACTGGTTTCCGGTGAATTTTT
CTAAAGGAATGAAGCAAAAGGTCATGATTATCTGTGCTTTTATGGTCAATCCTAGTTTGTTGATTGTGGATGAGCCGTTT
TTGGGCTTGGATCCGGTGGCAATTGATGATTTGATCCGTTTATTAGAAGAAGAAAAAGCTAAAGGAACATCCATTTTGAT
GTCTACCCATGTTCTTGATTCAGCTGAAAAAATGTGTGATCGCTTTGTCATCTTACACCAAGGACAGGTACGTGCACAGG
GAGATTTAGCAACCTTACAGGCAGAATTTGGTCGAAAAGAAGCTAGCTTGAATGAATTGTATCTTGCTCTTACTAAAGAA
GGAGAGCAGGTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

76.569

97.951

0.75
  pptA Streptococcus thermophilus LMD-9

75.732

97.951

0.742

Multiple sequence alignment