Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   A4H00_RS00970 Genome accession   NZ_CP015196
Coordinates   198722..199711 (-) Length   329 a.a.
NCBI ID   WP_157770963.1    Uniprot ID   -
Organism   Streptococcus marmotae strain HTS5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 193722..204711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4H00_RS00950 pepC 194800..196137 (+) 1338 WP_067086217.1 aminopeptidase C -
  A4H00_RS00955 - 196393..196908 (-) 516 WP_067086220.1 VanZ family protein -
  A4H00_RS00960 rlmN 196905..198017 (-) 1113 WP_067086221.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  A4H00_RS00965 - 198025..198591 (-) 567 WP_067086225.1 YutD family protein -
  A4H00_RS00970 sepM 198722..199711 (-) 990 WP_157770963.1 SepM family pheromone-processing serine protease Regulator
  A4H00_RS00975 coaD 199757..200245 (-) 489 WP_067086227.1 pantetheine-phosphate adenylyltransferase -
  A4H00_RS00980 rsmD 200235..200774 (-) 540 WP_067086230.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A4H00_RS00985 - 201351..201734 (-) 384 WP_067086235.1 rhodanese-like domain-containing protein -
  A4H00_RS00990 - 201738..201950 (-) 213 WP_067091343.1 YqgQ family protein -
  A4H00_RS00995 - 202004..202183 (-) 180 WP_067086237.1 hypothetical protein -
  A4H00_RS01000 - 202648..203247 (-) 600 WP_067086239.1 response regulator transcription factor -
  A4H00_RS01005 - 203228..204334 (-) 1107 WP_067086245.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35370.18 Da        Isoelectric Point: 5.0927

>NTDB_id=177411 A4H00_RS00970 WP_157770963.1 198722..199711(-) (sepM) [Streptococcus marmotae strain HTS5]
MGSCFLPLPYYVESPGGASDIRSVLTVAGKKDDKPGSYNFVYIQVKPATAVQLLFAALDSHSDIIPKKELAGGANSEEFY
RINQFYMETSQNMAKYQGLKLAKKDTSLEFFGVYVLNVTDDSTFKQILNIADTVVSVNGKTFKSSPELIDYVSGLTLGSD
VEVGYLSSGKELTAKGKIIRLENGKNGIGIGLVDHTEVKSSEKIDFQTGNIGGPSAGLMFTLAIYTQLADPDLRDGRVIA
GTGTIEQDGSVGDIGGADKKVLSAAKAGASIFFAPNNPVDPEILKQKPDAKTNYEEAMEAVKRDKLTIQVVPVTNVQEAI
DYLKKTKGQ

Nucleotide


Download         Length: 990 bp        

>NTDB_id=177411 A4H00_RS00970 WP_157770963.1 198722..199711(-) (sepM) [Streptococcus marmotae strain HTS5]
ATGGGTAGCTGTTTTCTTCCCCTTCCCTACTATGTCGAAAGTCCGGGTGGAGCTTCTGATATTCGAAGTGTCTTGACCGT
GGCTGGGAAAAAAGATGACAAACCCGGCTCCTATAATTTTGTCTACATCCAAGTCAAACCTGCTACTGCTGTTCAGCTCT
TGTTTGCTGCTCTTGATTCCCATTCGGACATCATTCCCAAGAAAGAATTGGCAGGAGGCGCAAATAGCGAAGAGTTTTAC
CGGATTAATCAATTCTATATGGAAACTTCCCAAAATATGGCGAAATATCAAGGTTTAAAACTAGCTAAGAAAGACACTTC
TTTGGAGTTCTTTGGGGTCTATGTCCTCAATGTGACGGATGATTCGACTTTTAAGCAGATTTTGAATATTGCAGACACCG
TTGTGAGTGTGAATGGCAAGACCTTTAAGAGTTCGCCTGAACTCATTGACTATGTCAGTGGTTTAACATTAGGCAGCGAT
GTTGAGGTTGGTTATCTCAGTTCTGGTAAGGAATTGACCGCCAAAGGAAAAATTATTAGACTCGAAAACGGGAAAAATGG
CATTGGAATTGGCCTAGTTGACCATACCGAGGTTAAAAGTAGTGAAAAGATTGATTTCCAAACTGGTAATATCGGTGGTC
CGAGTGCAGGTTTAATGTTTACGCTTGCCATTTACACACAGTTAGCTGATCCTGATTTGCGAGACGGACGAGTAATTGCA
GGTACTGGAACGATTGAGCAAGACGGTTCTGTCGGTGATATTGGTGGAGCGGATAAGAAGGTCTTGTCTGCTGCAAAAGC
TGGGGCAAGTATCTTCTTTGCTCCCAATAATCCTGTTGATCCTGAAATCTTAAAACAAAAACCAGATGCTAAAACGAACT
ATGAAGAAGCAATGGAAGCTGTGAAAAGAGATAAATTGACTATTCAGGTTGTTCCAGTGACCAATGTCCAGGAAGCGATT
GATTATCTGAAAAAAACAAAGGGCCAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(213-277)

PDZ domain (PDZ_2)

(112-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

61.682

97.568

0.602

Multiple sequence alignment