Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE949_RS17615 Genome accession   NZ_CP018976
Coordinates   3120380..3120856 (-) Length   158 a.a.
NCBI ID   WP_001354275.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_545     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3115380..3125856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE949_RS28435 - 3115469..3115603 (-) 135 Protein_2950 transcriptional regulator -
  BE949_RS27585 - 3115573..3115722 (-) 150 Protein_2951 hypothetical protein -
  BE949_RS17575 (BE949_17860) - 3115828..3116004 (-) 177 WP_001586605.1 DUF957 domain-containing protein -
  BE949_RS17580 (BE949_17865) - 3116021..3116431 (-) 411 Protein_2953 DUF5983 family protein -
  BE949_RS17585 (BE949_17870) istB 3116516..3117262 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  BE949_RS17590 (BE949_17875) istA 3117277..3118818 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  BE949_RS28225 - 3119012..3119098 (-) 87 Protein_2956 DUF5983 family protein -
  BE949_RS17595 (BE949_17880) - 3119095..3119469 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  BE949_RS17600 (BE949_17885) - 3119559..3119927 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE949_RS17610 (BE949_17895) - 3120090..3120311 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  BE949_RS17615 (BE949_17900) radC 3120380..3120856 (-) 477 WP_001354275.1 RadC family protein Machinery gene
  BE949_RS17620 (BE949_17905) - 3120872..3121345 (-) 474 WP_001387789.1 antirestriction protein -
  BE949_RS27870 (BE949_17910) - 3121511..3121684 (-) 174 WP_001183321.1 hypothetical protein -
  BE949_RS17630 (BE949_17915) - 3121684..3122502 (-) 819 WP_001234716.1 DUF932 domain-containing protein -
  BE949_RS17640 (BE949_17925) - 3122620..3122815 (-) 196 Protein_2964 DUF905 family protein -
  BE949_RS17645 (BE949_17930) - 3122886..3125732 (-) 2847 WP_072617191.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17668.26 Da        Isoelectric Point: 7.2517

>NTDB_id=177370 BE949_RS17615 WP_001354275.1 3120380..3120856(-) (radC) [Escherichia coli strain Ecol_545]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=177370 BE949_RS17615 WP_001354275.1 3120380..3120856(-) (radC) [Escherichia coli strain Ecol_545]
ATGCAGCAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392