Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BE949_RS07025 Genome accession   NZ_CP018976
Coordinates   995789..997216 (+) Length   475 a.a.
NCBI ID   WP_072617301.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_545     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 990789..1002216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE949_RS06990 (BE949_07160) yeeW 990973..991167 (+) 195 WP_000988600.1 DUF5983 family protein -
  BE949_RS27465 (BE949_07165) - 991213..991293 (+) 81 Protein_994 hypothetical protein -
  BE949_RS06995 - 991582..991710 (-) 129 Protein_995 transposase domain-containing protein -
  BE949_RS07000 (BE949_07170) - 991782..991964 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  BE949_RS07005 (BE949_07175) tmaR 992065..992394 (-) 330 WP_000450409.1 DUF496 family protein -
  BE949_RS07010 (BE949_07180) yeeA 992566..993624 (-) 1059 WP_001200891.1 FUSC family protein -
  BE949_RS07015 (BE949_07185) sbmC 993822..994295 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  BE949_RS07020 (BE949_07190) dacD 994414..995580 (-) 1167 WP_042031746.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BE949_RS07025 (BE949_07195) sbcB 995789..997216 (+) 1428 WP_072617301.1 exodeoxyribonuclease I Machinery gene
  BE949_RS07030 (BE949_07200) tsuB 997259..997486 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BE949_RS07035 (BE949_07205) tsuA 997500..998558 (-) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  BE949_RS07040 (BE949_07210) plaP 998737..1000095 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BE949_RS27470 yoeI 1000085..1000147 (-) 63 WP_010723108.1 membrane protein YoeI -
  BE949_RS07045 (BE949_07215) yeeY 1000362..1001291 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  BE949_RS07050 (BE949_07220) yeeZ 1001337..1002161 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=177344 BE949_RS07025 WP_072617301.1 995789..997216(+) (sbcB) [Escherichia coli strain Ecol_545]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYIFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=177344 BE949_RS07025 WP_072617301.1 995789..997216(+) (sbcB) [Escherichia coli strain Ecol_545]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATATCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCGCTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment