Detailed information NTG0177312

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: BE966_RS22885
• Genome accession: NZ_CP018970
• Coordinates: 4126303..4127328 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain Ecol_542
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4121303..4132328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BE966_RS22855 (BE966_23415)	zapB	4121387..4121632 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
BE966_RS22860 (BE966_23420)	rraA	4121717..4122202 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
BE966_RS22865 (BE966_23425)	menA	4122295..4123221 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
BE966_RS22870 (BE966_23430)	hslU	4123288..4124619 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
BE966_RS22875 (BE966_23435)	hslV	4124629..4125159 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
BE966_RS22880 (BE966_23440)	ftsN	4125252..4126211 (-)	960	WP_000068834.1	cell division protein FtsN	-
BE966_RS22885 (BE966_23445)	cytR	4126303..4127328 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
BE966_RS22890 (BE966_23450)	priA	4127484..4129682 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
BE966_RS22895 (BE966_23455)	rpmE	4129885..4130097 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
BE966_RS22900 (BE966_23460)	yiiX	4130158..4130766 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
BE966_RS22905 (BE966_23465)	metJ	4130826..4131143 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=177312 BE966_RS22885 WP_000644908.1 4126303..4127328(-) (cytR) [Escherichia coli strain Ecol_542]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=177312 BE966_RS22885 WP_000644908.1 4126303..4127328(-) (cytR) [Escherichia coli strain Ecol_542]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625