Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Bt4C1_RS09890 Genome accession   NZ_CP015176
Coordinates   1918044..1918331 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar alesti strain BGSC 4C1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1913044..1923331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bt4C1_RS30070 - 1914225..1914422 (+) 198 WP_014894789.1 DUF4083 domain-containing protein -
  Bt4C1_RS09875 (Bt4C1_09880) - 1914451..1914912 (+) 462 WP_000024996.1 NUDIX hydrolase -
  Bt4C1_RS09880 (Bt4C1_09885) nadE 1914954..1915772 (-) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  Bt4C1_RS09885 (Bt4C1_09890) - 1916048..1917928 (+) 1881 WP_063675241.1 ABC transporter permease -
  Bt4C1_RS09890 (Bt4C1_09895) abrB 1918044..1918331 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Bt4C1_RS09895 (Bt4C1_09900) - 1918607..1919554 (+) 948 WP_000099758.1 serine protease -
  Bt4C1_RS09900 (Bt4C1_09905) - 1919594..1919902 (-) 309 WP_001259903.1 helix-turn-helix transcriptional regulator -
  Bt4C1_RS09905 (Bt4C1_09910) - 1920009..1920944 (+) 936 WP_063675242.1 aldo/keto reductase -
  Bt4C1_RS09910 (Bt4C1_09915) - 1920969..1921598 (+) 630 Protein_1934 MFS transporter -
  Bt4C1_RS09915 (Bt4C1_09920) - 1921918..1922142 (-) 225 WP_000162602.1 hypothetical protein -
  Bt4C1_RS09920 (Bt4C1_09925) - 1922227..1922574 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  Bt4C1_RS09925 (Bt4C1_09930) - 1922771..1923298 (+) 528 WP_063676308.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=177309 Bt4C1_RS09890 WP_000648324.1 1918044..1918331(+) (abrB) [Bacillus thuringiensis serovar alesti strain BGSC 4C1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=177309 Bt4C1_RS09890 WP_000648324.1 1918044..1918331(+) (abrB) [Bacillus thuringiensis serovar alesti strain BGSC 4C1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment