Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IEC338SC_RS04165 Genome accession   NZ_CP015145
Coordinates   871893..874121 (-) Length   742 a.a.
NCBI ID   WP_063098023.1    Uniprot ID   -
Organism   Acinetobacter pittii strain IEC338SC     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 866893..879121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS04145 (IEC338SC_0834) cbpA 867080..868036 (-) 957 WP_063098020.1 DnaJ C-terminal domain-containing protein -
  IEC338SC_RS04150 (IEC338SC_0835) - 868183..868794 (-) 612 WP_063098021.1 LysE family translocator -
  IEC338SC_RS04155 (IEC338SC_0836) hslO 868933..869808 (-) 876 WP_005079292.1 Hsp33 family molecular chaperone HslO -
  IEC338SC_RS04160 (IEC338SC_0837) kefB 869972..871816 (-) 1845 WP_063098022.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IEC338SC_RS04165 (IEC338SC_0838) priA 871893..874121 (-) 2229 WP_063098023.1 primosomal protein N' Machinery gene
  IEC338SC_RS04170 (IEC338SC_0839) gspF 874270..875475 (+) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  IEC338SC_RS04175 (IEC338SC_0840) gspG 875499..876014 (+) 516 WP_017385392.1 type II secretion system major pseudopilin GspG -
  IEC338SC_RS04180 (IEC338SC_0841) - 876281..876625 (+) 345 WP_002114661.1 hypothetical protein -
  IEC338SC_RS04185 (IEC338SC_0842) csaA 876772..877110 (+) 339 WP_005804172.1 tRNA-binding protein -
  IEC338SC_RS04190 (IEC338SC_0843) lnt 877112..878671 (-) 1560 WP_063098024.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84018.77 Da        Isoelectric Point: 8.5613

>NTDB_id=177099 IEC338SC_RS04165 WP_063098023.1 871893..874121(-) (priA) [Acinetobacter pittii strain IEC338SC]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETSTLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHHYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYYLVETGKLTALQLNKRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDITDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=177099 IEC338SC_RS04165 WP_063098023.1 871893..874121(-) (priA) [Acinetobacter pittii strain IEC338SC]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGATACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCTCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACTGCCCTACCTGCATTATTGCGTCAAGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGCTCTGTTAAACAACAAGATGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGGGTAGAAACGTCTACGCTTAAAGCACTTCAAAAGAAGGGACTAGTCGA
CTGTACGCTTGAACCGCACGACTTTAGCCCATCACCTGTTCAATTGGCACAAATGCCACTTACACTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCACTACCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCTGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAATCACGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCCA
AACGCTTGCAGGCATGGCAACAGGCCCAGACTGGCAAAGCATCTATTATTTTAGGAACGCGCTCTGCCATCTATACGCCA
CTGCCACGTTTGGGCCTCATCATCTTAGATGAAGAACATGATCTGTCTTATAAGCAACAAGAAGGCTTCCGCTACCATGC
GCGTGATGTCGCTCTTTATCGAGGTCACTTACAAAGCTGCCCTGTTATTTTAGGTTCAGCAACTCCAAGCATAGATAGTT
ATTATTTAGTCGAAACTGGCAAATTAACTGCACTGCAACTCAACAAACGTGCTGGACATGCACTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCCCTTATTGAACAAATCAAACATACATTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTTTGTGAAAGCTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCGCATTTTACATTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCTTAGGTGCTGGAACGGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGTACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTGGGCACTCAAATGTTGGCTAAAGGCCATCATTTCCCA
CACGTAACTTTGGTTGCTATTTTAGATATTGATGCTGGGTTACTTAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ACCCTTTACTAACCACACTCATCGAAAAAGATTATCGGGCAGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCGCCTTATCGTTATGCCGTACTGATACGTGCAGAGTCCAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGACATTACTGATATTTGGGGGCCGATTCCAGCCCCTATGGAGCGTAAAGCTG
GACGCTACCGTGCTCACATGGTGATTTTATCTGCCGACCGTGCTCGCCTCCATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCACCGCGTCAACATCAACTCAGGCTGTCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978

Multiple sequence alignment