Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IEC338SC_RS02320 Genome accession   NZ_CP015145
Coordinates   476477..477361 (+) Length   294 a.a.
NCBI ID   WP_063097842.1    Uniprot ID   A0AB33B8Y0
Organism   Acinetobacter pittii strain IEC338SC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471477..482361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS02295 (IEC338SC_0462) - 471790..473037 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  IEC338SC_RS02300 (IEC338SC_0463) wrbA 473399..474001 (+) 603 WP_079381004.1 NAD(P)H:quinone oxidoreductase -
  IEC338SC_RS02305 (IEC338SC_0464) xpt 474053..474628 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  IEC338SC_RS02310 (IEC338SC_0465) - 474701..475414 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  IEC338SC_RS02315 (IEC338SC_0466) - 475573..476244 (-) 672 WP_063097841.1 hypothetical protein -
  IEC338SC_RS02320 (IEC338SC_0467) tonB2 476477..477361 (+) 885 WP_063097842.1 energy transducer TonB Machinery gene
  IEC338SC_RS02325 (IEC338SC_0468) ybeY 477413..477889 (-) 477 WP_017481656.1 rRNA maturation RNase YbeY -
  IEC338SC_RS02330 (IEC338SC_0469) phoL 477899..478987 (-) 1089 WP_002119513.1 PhoH family protein -
  IEC338SC_RS02335 (IEC338SC_0470) miaB 479025..480476 (-) 1452 WP_063097843.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33640.27 Da        Isoelectric Point: 7.2531

>NTDB_id=177086 IEC338SC_RS02320 WP_063097842.1 476477..477361(+) (tonB2) [Acinetobacter pittii strain IEC338SC]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQLGSGV
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=177086 IEC338SC_RS02320 WP_063097842.1 476477..477361(+) (tonB2) [Acinetobacter pittii strain IEC338SC]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCTATGCCTAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGACCAGCTAGGTTCAGGTGTA
TTTCGTGAAGCTCACCGAACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAAAAAC
AAGCGGATGCAAGTCAAAGAAAAAAAGAACTGGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAGATAAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCGGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTACCCTGAAGAAG
CCAAACAGCAGCAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATAGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.776

100

0.888

Multiple sequence alignment