Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IEC338SC_RS01485 Genome accession   NZ_CP015145
Coordinates   314996..315637 (+) Length   213 a.a.
NCBI ID   WP_063097769.1    Uniprot ID   A0AB33BG69
Organism   Acinetobacter pittii strain IEC338SC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309996..320637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS01465 (IEC338SC_0294) - 310040..310372 (+) 333 WP_002116981.1 hypothetical protein -
  IEC338SC_RS01470 (IEC338SC_0295) rrmA 310375..311199 (+) 825 WP_082188412.1 putative RNA methyltransferase -
  IEC338SC_RS01475 (IEC338SC_0296) ponA 311215..313776 (-) 2562 WP_063097767.1 penicillin-binding protein PBP1a -
  IEC338SC_RS01480 (IEC338SC_0297) pilM 313938..314996 (+) 1059 WP_063097768.1 pilus assembly protein PilM Machinery gene
  IEC338SC_RS01485 (IEC338SC_0298) pilN 314996..315637 (+) 642 WP_063097769.1 PilN domain-containing protein Machinery gene
  IEC338SC_RS01490 (IEC338SC_0299) pilO 315634..316386 (+) 753 WP_063097770.1 type 4a pilus biogenesis protein PilO Machinery gene
  IEC338SC_RS01495 (IEC338SC_0300) pilP 316397..316924 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  IEC338SC_RS01500 (IEC338SC_0301) pilQ 316987..319113 (+) 2127 WP_063097771.1 type IV pilus secretin PilQ family protein Machinery gene
  IEC338SC_RS01505 (IEC338SC_0302) aroK 319125..319694 (+) 570 WP_063097772.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23969.43 Da        Isoelectric Point: 6.4558

>NTDB_id=177079 IEC338SC_RS01485 WP_063097769.1 314996..315637(+) (pilN) [Acinetobacter pittii strain IEC338SC]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELARVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKALSSLLPRVEDSYGSFVVTVDVGEIGVTTTNDTANTPVSTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=177079 IEC338SC_RS01485 WP_063097769.1 314996..315637(+) (pilN) [Acinetobacter pittii strain IEC338SC]
ATGGCAACAATTAATTTACTTCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCAGTCGTTGTGCGTTTGGTGGATGAATTAGCGCG
TGTGACACCTGCTGCCATGTATTTAACTAAATTCAGTCGAACTGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAATTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTCTGAGTTCGTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATTGGGGTGACTACAACAAATGATACCGCCAATACGCCTGTAAGTACGGATAAGGAGGTGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.045

94.366

0.859
  comN Acinetobacter baylyi ADP1

71.707

96.244

0.69

Multiple sequence alignment