Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WM93_RS15880 Genome accession   NZ_CP015134
Coordinates   3100101..3100697 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain ATCC 35657     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095101..3105697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM93_RS15855 (WM93_15245) - 3095293..3097050 (-) 1758 WP_004147851.1 AAA family ATPase -
  WM93_RS15860 (WM93_15250) matP 3097236..3097688 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  WM93_RS15865 (WM93_15255) ompA 3097820..3098890 (-) 1071 WP_002898408.1 porin OmpA -
  WM93_RS15870 (WM93_15260) sulA 3099243..3099752 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  WM93_RS15880 (WM93_15265) sxy/tfoX 3100101..3100697 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  WM93_RS15885 (WM93_15270) yccS 3100711..3102846 (-) 2136 WP_002898422.1 YccS family putative transporter -
  WM93_RS15890 (WM93_15275) - 3102864..3103310 (-) 447 WP_002898425.1 YccF domain-containing protein -
  WM93_RS15895 (WM93_15280) helD 3103435..3105489 (+) 2055 WP_075394721.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=177016 WM93_RS15880 WP_004179217.1 3100101..3100697(+) (sxy/tfoX) [Klebsiella pneumoniae strain ATCC 35657]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=177016 WM93_RS15880 WP_004179217.1 3100101..3100697(+) (sxy/tfoX) [Klebsiella pneumoniae strain ATCC 35657]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment