Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE957_RS17620 Genome accession   NZ_CP018948
Coordinates   2951644..2952132 (-) Length   162 a.a.
NCBI ID   WP_000142750.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2946644..2957132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE957_RS17585 (BE957_17880) - 2946957..2947829 (-) 873 WP_069067312.1 hypothetical protein -
  BE957_RS17590 (BE957_17885) - 2947831..2948025 (-) 195 WP_000999224.1 AlpA family transcriptional regulator -
  BE957_RS17595 (BE957_17890) - 2948149..2948736 (+) 588 WP_223541554.1 hypothetical protein -
  BE957_RS17600 (BE957_17895) - 2948950..2949897 (-) 948 WP_000213673.1 site-specific integrase -
  BE957_RS28785 - 2949974..2950144 (-) 171 WP_229026486.1 DUF905 family protein -
  BE957_RS28790 - 2950226..2950591 (-) 366 Protein_2836 TA system toxin CbtA family protein -
  BE957_RS17610 (BE957_17905) - 2950701..2951060 (-) 360 WP_019841938.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BE957_RS17615 (BE957_17910) - 2951121..2951552 (-) 432 WP_001024425.1 DUF2787 family protein -
  BE957_RS17620 (BE957_17915) radC 2951644..2952132 (-) 489 WP_000142750.1 DNA repair protein RadC Machinery gene
  BE957_RS17625 (BE957_17920) - 2952155..2952697 (-) 543 WP_000174655.1 hypothetical protein -
  BE957_RS17630 (BE957_17925) - 2952855..2953235 (-) 381 WP_000093666.1 hypothetical protein -
  BE957_RS17635 (BE957_17930) - 2953356..2953625 (+) 270 WP_001442951.1 helix-turn-helix domain-containing protein -
  BE957_RS17640 (BE957_17935) - 2953638..2954165 (+) 528 WP_000108266.1 hypothetical protein -
  BE957_RS17645 (BE957_17940) - 2954219..2954737 (+) 519 WP_001232453.1 hypothetical protein -
  BE957_RS17650 (BE957_17945) - 2954749..2955063 (+) 315 WP_000716184.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18365.11 Da        Isoelectric Point: 7.6495

>NTDB_id=176979 BE957_RS17620 WP_000142750.1 2951644..2952132(-) (radC) [Escherichia coli strain Ecol_224]
MTFIASDRSGHYQTLEPVTREQIIRFAHSLLTRQFRNRRKITSSEDVRQWLVMKLALENRESFGVIMLSQQHHILGYQTL
FIGTLSQTMVYPREIVSLALTHNAAAVILVHNHPSGEPEPSQADKLITQKITDALALLDIRVTDHLIVGGDKAWSFAEHG
LL

Nucleotide


Download         Length: 489 bp        

>NTDB_id=176979 BE957_RS17620 WP_000142750.1 2951644..2952132(-) (radC) [Escherichia coli strain Ecol_224]
ATGACGTTTATCGCAAGTGATCGTAGCGGTCATTATCAGACGCTGGAGCCGGTTACCCGCGAACAGATTATCCGGTTTGC
CCATTCATTGCTGACCCGCCAGTTTCGCAATCGCCGAAAAATCACCTCATCTGAAGATGTACGTCAGTGGCTGGTGATGA
AGCTGGCGCTTGAAAACCGTGAATCTTTTGGTGTGATAATGCTTTCACAGCAACATCATATTCTCGGCTACCAGACATTG
TTTATCGGTACGCTGAGCCAGACGATGGTTTATCCCCGCGAAATAGTCAGCTTGGCACTGACGCACAACGCTGCTGCTGT
GATACTGGTGCATAACCATCCCAGTGGTGAGCCTGAACCGAGCCAGGCCGATAAACTCATTACCCAAAAAATTACAGACG
CACTGGCGTTGCTGGATATCCGCGTGACCGACCATCTCATTGTGGGAGGCGACAAAGCCTGGTCTTTCGCTGAACACGGG
CTACTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

52.459

75.309

0.395