Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE957_RS12960 Genome accession   NZ_CP018948
Coordinates   2084161..2084637 (-) Length   158 a.a.
NCBI ID   WP_001347688.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2079161..2089637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE957_RS12920 (BE957_13165) tmaR 2080300..2080629 (+) 330 WP_000450409.1 DUF496 family protein -
  BE957_RS28730 (BE957_13170) - 2080730..2081095 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  BE957_RS28525 (BE957_13175) - 2081366..2081737 (-) 372 WP_001295631.1 IS110 family transposase -
  BE957_RS27975 (BE957_13180) - 2082553..2082633 (-) 81 Protein_1975 hypothetical protein -
  BE957_RS12935 (BE957_13185) - 2082733..2082882 (-) 150 Protein_1976 DUF5983 family protein -
  BE957_RS12940 (BE957_13190) - 2082879..2083256 (-) 378 WP_000854752.1 TA system toxin CbtA family protein -
  BE957_RS12945 (BE957_13195) cbeA 2083346..2083714 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BE957_RS12955 (BE957_13205) yeeT 2083877..2084098 (-) 222 WP_000692329.1 DUF987 domain-containing protein -
  BE957_RS12960 (BE957_13210) radC 2084161..2084637 (-) 477 WP_001347688.1 RadC family protein Machinery gene
  BE957_RS12965 (BE957_13215) - 2084653..2085138 (-) 486 WP_000849582.1 antirestriction protein -
  BE957_RS12970 (BE957_13220) - 2085193..2086011 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  BE957_RS12980 (BE957_13230) - 2086111..2086344 (-) 234 WP_001119729.1 DUF905 family protein -
  BE957_RS12985 (BE957_13235) - 2086423..2086878 (-) 456 WP_000581504.1 IrmA family protein -
  BE957_RS12990 (BE957_13240) - 2086954..2089470 (-) 2517 WP_001348608.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17615.28 Da        Isoelectric Point: 7.6151

>NTDB_id=176967 BE957_RS12960 WP_001347688.1 2084161..2084637(-) (radC) [Escherichia coli strain Ecol_224]
MQQLSFLPGAMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=176967 BE957_RS12960 WP_001347688.1 2084161..2084637(-) (radC) [Escherichia coli strain Ecol_224]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGTGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCTGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392