Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BE957_RS09180 Genome accession   NZ_CP018948
Coordinates   1340729..1341244 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_224     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335729..1346244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE957_RS09135 (BE957_09315) csrA 1336181..1336366 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BE957_RS09165 (BE957_09345) yqaB 1337959..1338525 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BE957_RS09170 (BE957_09350) yqaA 1338522..1338950 (+) 429 WP_001287457.1 YqaA family protein -
  BE957_RS09175 (BE957_09355) gshA 1339023..1340579 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BE957_RS09180 (BE957_09360) luxS 1340729..1341244 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  BE957_RS09185 (BE957_09365) emrB 1341308..1342846 (-) 1539 WP_060615027.1 multidrug efflux MFS transporter permease subunit EmrB -
  BE957_RS09190 (BE957_09370) emrA 1342863..1344035 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BE957_RS09195 (BE957_09375) emrR 1344162..1344692 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BE957_RS09200 (BE957_09380) ygaH 1344783..1345118 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BE957_RS09205 (BE957_09385) ygaZ 1345108..1345845 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=176957 BE957_RS09180 WP_001130207.1 1340729..1341244(+) (luxS) [Escherichia coli strain Ecol_224]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=176957 BE957_RS09180 WP_001130207.1 1340729..1341244(+) (luxS) [Escherichia coli strain Ecol_224]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731