Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BE957_RS03885 Genome accession   NZ_CP018948
Coordinates   318124..318792 (+) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli strain Ecol_224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 313124..323792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE957_RS03850 (BE957_03990) yicC 313143..314006 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  BE957_RS03860 (BE957_04000) rph 314133..314849 (+) 717 WP_001247093.1 ribonuclease PH -
  BE957_RS03865 (BE957_04005) pyrE 314915..315556 (+) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  BE957_RS03870 (BE957_04010) slmA 315593..316189 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BE957_RS03875 (BE957_04015) dut 316296..316754 (-) 459 WP_000976070.1 dUTP diphosphatase -
  BE957_RS03880 (BE957_04020) coaBC 316732..317952 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BE957_RS03885 (BE957_04025) radC 318124..318792 (+) 669 WP_001352775.1 DNA repair protein RadC Machinery gene
  BE957_RS03890 (BE957_04030) rpmB 319009..319245 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  BE957_RS03895 (BE957_04035) rpmG 319266..319433 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  BE957_RS03900 (BE957_04040) mutM 319531..320340 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BE957_RS03905 (BE957_04045) coaD 320379..320858 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BE957_RS03910 (BE957_04050) waaA 320866..322143 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BE957_RS03915 (BE957_04055) rfaQ 322556..323614 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=176938 BE957_RS03885 WP_001352775.1 318124..318792(+) (radC) [Escherichia coli strain Ecol_224]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=176938 BE957_RS03885 WP_001352775.1 318124..318792(+) (radC) [Escherichia coli strain Ecol_224]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment