Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   A4U85_RS17840 Genome accession   NZ_CP015121
Coordinates   3744950..3746080 (+) Length   376 a.a.
NCBI ID   WP_001984977.1    Uniprot ID   D0CEJ5
Organism   Acinetobacter baumannii strain ab736     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3739950..3751080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U85_RS17815 (A4U85_17660) - 3740210..3740416 (-) 207 WP_000182542.1 hypothetical protein -
  A4U85_RS17820 (A4U85_17665) - 3740470..3742584 (-) 2115 WP_001120684.1 TonB-dependent copper receptor -
  A4U85_RS17825 (A4U85_17670) - 3742657..3743085 (-) 429 WP_000231976.1 DUF2946 family protein -
  A4U85_RS17830 (A4U85_17675) def 3743122..3743652 (-) 531 WP_001196539.1 peptide deformylase -
  A4U85_RS17835 (A4U85_17680) tsaP 3743775..3744929 (+) 1155 WP_000755112.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  A4U85_RS17840 (A4U85_17685) dprA 3744950..3746080 (+) 1131 WP_001984977.1 DNA-processing protein DprA Machinery gene
  A4U85_RS17845 (A4U85_17690) - 3746131..3746700 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  A4U85_RS17850 (A4U85_17695) - 3747092..3748012 (-) 921 WP_000084546.1 DMT family transporter -
  A4U85_RS17855 (A4U85_17700) - 3748118..3748768 (-) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  A4U85_RS17860 (A4U85_17705) - 3748905..3750119 (+) 1215 WP_000372842.1 MFS transporter -
  A4U85_RS17865 (A4U85_17710) - 3750141..3750905 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41914.43 Da        Isoelectric Point: 6.5815

>NTDB_id=176924 A4U85_RS17840 WP_001984977.1 3744950..3746080(+) (dprA) [Acinetobacter baumannii strain ab736]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQV
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASTHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=176924 A4U85_RS17840 WP_001984977.1 3744950..3746080(+) (dprA) [Acinetobacter baumannii strain ab736]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAAGCGCAGTTTGAACAACTTGTACAACAAGTT
CGTCAGCATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAGCCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTACTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTACTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAACTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB D0CEJ5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

99.202

100

0.992

  dprA Acinetobacter baumannii D1279779

98.936

100

0.989

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

43.202

88.032

0.38


Multiple sequence alignment