Detailed information NTG0176902

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: A4U85_RS09670
• Genome accession: NZ_CP015121
• Coordinates: 2062315..2063016 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain ab736
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2057315..2068016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4U85_RS09640 (A4U85_09595)	-	2057622..2058065 (-)	444	WP_001246675.1	SRPBCC family protein	-
A4U85_RS09645 (A4U85_09600)	tadA	2058135..2058638 (-)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
A4U85_RS09650 (A4U85_09605)	-	2058645..2059769 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
A4U85_RS09655 (A4U85_09610)	ung	2059766..2060479 (-)	714	WP_001177525.1	uracil-DNA glycosylase	-
A4U85_RS09660 (A4U85_09615)	-	2060530..2061126 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
A4U85_RS09665 (A4U85_09620)	gspK	2061356..2062315 (-)	960	WP_000301461.1	type II secretion system minor pseudopilin GspK	-
A4U85_RS09670 (A4U85_09625)	xcpW	2062315..2063016 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
A4U85_RS09675 (A4U85_09630)	xcpV	2063016..2063396 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
A4U85_RS09680 (A4U85_09635)	-	2063386..2063940 (-)	555	WP_000841370.1	type II secretion system protein	-
A4U85_RS09685 (A4U85_09640)	-	2063950..2064558 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
A4U85_RS09690 (A4U85_09645)	-	2064596..2065369 (-)	774	WP_000497298.1	TatD family hydrolase	-
A4U85_RS09695 (A4U85_09650)	-	2065387..2065728 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
A4U85_RS09700 (A4U85_09655)	-	2065740..2066720 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
A4U85_RS09705 (A4U85_09660)	kdsB	2066732..2067493 (-)	762	WP_000680698.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=176902 A4U85_RS09670 WP_000594572.1 2062315..2063016(-) (xcpW) [Acinetobacter baumannii strain ab736]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=176902 A4U85_RS09670 WP_000594572.1 2062315..2063016(-) (xcpW) [Acinetobacter baumannii strain ab736]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
TGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAACTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991