Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   A3780_RS22700 Genome accession   NZ_CP015113
Coordinates   4784846..4786279 (+) Length   477 a.a.
NCBI ID   WP_035887975.1    Uniprot ID   -
Organism   Kosakonia radicincitans strain GXGL-4A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4779846..4791279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3780_RS22670 (A3780_22125) - 4780415..4781389 (+) 975 WP_007369903.1 calcium/sodium antiporter -
  A3780_RS22675 (A3780_22130) kdsD 4781403..4782389 (+) 987 WP_007369902.1 arabinose-5-phosphate isomerase KdsD -
  A3780_RS22680 (A3780_22135) kdsC 4782404..4782970 (+) 567 WP_071921600.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  A3780_RS22685 (A3780_22140) lptC 4782967..4783542 (+) 576 WP_071921601.1 LPS export ABC transporter periplasmic protein LptC -
  A3780_RS22690 (A3780_22145) lptA 4783511..4784065 (+) 555 WP_007369899.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  A3780_RS22695 (A3780_22150) lptB 4784072..4784797 (+) 726 WP_007369898.1 LPS export ABC transporter ATP-binding protein -
  A3780_RS22700 (A3780_22155) rpoN/rpoN1 4784846..4786279 (+) 1434 WP_035887975.1 RNA polymerase factor sigma-54 Machinery gene
  A3780_RS22705 (A3780_22160) hpf 4786302..4786589 (+) 288 WP_007369896.1 ribosome hibernation promoting factor -
  A3780_RS22710 (A3780_22165) ptsN 4786672..4787163 (+) 492 WP_007369895.1 PTS IIA-like nitrogen regulatory protein PtsN -
  A3780_RS22715 (A3780_22170) rapZ 4787206..4788060 (+) 855 WP_007369894.1 RNase adapter RapZ -
  A3780_RS22720 (A3780_22175) npr 4788057..4788329 (+) 273 WP_007369893.1 PTS phosphocarrier protein NPr -
  A3780_RS22725 (A3780_22180) mtgA 4788331..4789062 (-) 732 WP_035887977.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  A3780_RS22730 (A3780_22185) elbB 4789059..4789712 (-) 654 WP_007369891.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53802.57 Da        Isoelectric Point: 4.3889

>NTDB_id=176742 A3780_RS22700 WP_035887975.1 4784846..4786279(+) (rpoN/rpoN1) [Kosakonia radicincitans strain GXGL-4A]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQADLHEEVDSQQTQENEGLDTVDALEQKEMPE
ELPLDASWDEIYTAGTPSGSSHDYIDDELPIYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLED
VLESMGDEEIGLDEVEAVLKRVQRFDPVGVAARDLRDCLLIQLSQFAKDTPWCEEARLIISDHLDLLANHDFRSLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQINQHYASMGGGARNDADTQFIR
SNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=176742 A3780_RS22700 WP_035887975.1 4784846..4786279(+) (rpoN/rpoN1) [Kosakonia radicincitans strain GXGL-4A]
ATGAAGCAAGGTTTGCAATTAAGGCTTAGCCAACAGCTAGCTATGACGCCGCAACTGCAACAGGCTATCCGTCTGTTGCA
GCTGTCTACGTTAGAACTTCAGCAGGAACTTCAGCAAGCGCTGGAGAGTAACCCATTGCTGGAACAAGCCGATCTTCATG
AAGAAGTGGATAGCCAACAAACCCAGGAAAATGAAGGCCTGGATACTGTAGACGCGCTCGAACAGAAAGAGATGCCTGAA
GAGCTGCCGCTGGACGCCAGCTGGGATGAGATTTATACCGCCGGAACGCCTTCCGGCAGCAGCCACGATTATATTGATGA
CGAACTGCCGATTTATCAGGGTGAAACGACACAGTCTCTTCAGGATTACCTGATGTGGCAGGTAGAGTTAACGCCGTTTT
CCGATACCGATCGCGCAATCGCAACCTCTATTGTCGATGCTGTCGATGAGACCGGCTACCTTACCGTGTCGCTTGAGGAT
GTGCTGGAAAGCATGGGCGATGAAGAAATCGGTCTCGATGAAGTTGAAGCGGTGTTAAAGCGCGTTCAGCGTTTCGATCC
GGTTGGCGTCGCTGCGCGCGATCTGCGCGACTGCCTGTTGATCCAACTGTCCCAATTCGCGAAAGATACGCCCTGGTGTG
AAGAGGCTCGCCTGATTATCAGCGATCACCTTGATCTGCTCGCTAACCATGATTTCCGCTCTCTCATGCGCGTCACACGT
CTTAAAGAGGATGTGCTGAAAGAAGCGGTAAATCTGATCCAGTCGCTGGATCCGCGCCCCGGCCAGTCGATCCAGACCGG
TGAACCAGAATATGTCATCCCGGATGTGCTGGTGCGTAAGCACAACGGGCGCTGGACGGTAGAACTGAACTCCGATAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCTTCAATGGGCGGTGGCGCGCGCAATGACGCCGACACCCAGTTTATCCGC
AGTAACTTGCAGGAAGCGAAGTGGCTGATCAAAAGCCTTGAAAGCCGTAATGACACGCTATTGCGCGTCAGCCGCTGCAT
CGTCGAGCAGCAGCAGGCATTCTTTGAACAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGATATCGCTCAGGCCG
TCGAAATGCACGAGTCCACGATTTCCCGTGTGACAACGCAGAAGTACCTGCACAGTCCTCGCGGCATTTTTGAACTGAAG
TATTTCTTCTCCAGCCATGTGAATACGGAAGGCGGCGGCGAAGCCTCGTCAACAGCCATTCGCGCACTGGTTAAGAAATT
AATCGCCGCAGAAAACCCTGCAAAACCACTGAGCGACAGTAAGCTGACGACGCTACTTTCCGATCAAGGAATTATGGTAG
CGCGGCGTACCGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.747

100

0.482

Multiple sequence alignment