Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A3780_RS08160 Genome accession   NZ_CP015113
Coordinates   1751439..1752059 (+) Length   206 a.a.
NCBI ID   WP_007374186.1    Uniprot ID   A0AAX2EN59
Organism   Kosakonia radicincitans strain GXGL-4A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746439..1757059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3780_RS08140 (A3780_07975) - 1746823..1748583 (-) 1761 WP_035885841.1 AAA family ATPase -
  A3780_RS08145 (A3780_07980) matP 1748766..1749218 (+) 453 WP_007374182.1 macrodomain Ter protein MatP -
  A3780_RS08150 (A3780_07985) ompA 1749296..1750345 (-) 1050 WP_007374183.1 porin OmpA -
  A3780_RS08155 (A3780_07990) sulA 1750712..1751221 (-) 510 WP_007374185.1 SOS-induced cell division inhibitor SulA -
  A3780_RS08160 (A3780_07995) sxy/tfoX 1751439..1752059 (+) 621 WP_007374186.1 TfoX/Sxy family DNA transformation protein Regulator
  A3780_RS08165 (A3780_08000) yccS 1752053..1754182 (-) 2130 WP_071920578.1 YccS family putative transporter -
  A3780_RS08170 (A3780_08005) - 1754200..1754646 (-) 447 WP_071920579.1 YccF domain-containing protein -
  A3780_RS08175 (A3780_08010) helD 1754769..1756823 (+) 2055 WP_071920580.1 DNA helicase IV -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23637.34 Da        Isoelectric Point: 8.4759

>NTDB_id=176729 A3780_RS08160 WP_007374186.1 1751439..1752059(+) (sxy/tfoX) [Kosakonia radicincitans strain GXGL-4A]
MEDLSYQRIYQSCECLTSLGEIRHRAHFGGYSLSVDDTVFAMVAEGELYLRACEQSAQYAITHHAPLLVFNKRGREVSLN
YYFVDQALWNDRPMLLELSAYSLDAARREKVQRSARKRLRDLPNLTFQLEMQLRDVGIMDVQTLRLLGAKASWLRLRKAN
CHLGVKILLALEGAITGLHEAALPAQTRQELMEWFTIVMKKTANPH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=176729 A3780_RS08160 WP_007374186.1 1751439..1752059(+) (sxy/tfoX) [Kosakonia radicincitans strain GXGL-4A]
ATGGAAGACCTTTCTTATCAGCGTATATATCAATCATGTGAATGTCTCACATCGCTTGGCGAAATTCGTCACCGTGCGCA
TTTTGGCGGTTATAGCTTGTCGGTGGATGACACGGTTTTTGCAATGGTGGCCGAAGGAGAGCTTTATCTGCGGGCCTGTG
AACAAAGCGCTCAATATGCAATAACGCACCATGCGCCACTTTTAGTATTCAACAAACGTGGACGGGAGGTTTCGTTAAAT
TACTACTTTGTGGATCAGGCATTATGGAACGATCGCCCTATGCTGCTGGAACTTTCGGCATATTCTCTCGATGCTGCACG
GCGTGAAAAAGTGCAGCGCAGCGCCCGGAAACGTCTTCGCGATCTCCCTAATCTGACGTTTCAGCTCGAAATGCAGCTTC
GTGATGTCGGAATTATGGATGTACAGACGTTGCGTCTTCTTGGCGCAAAGGCCAGTTGGCTCAGGTTGCGGAAAGCGAAT
TGCCATCTGGGGGTGAAAATTCTTCTGGCGCTGGAAGGCGCTATTACTGGATTGCACGAAGCGGCGCTCCCGGCGCAGAC
GCGCCAGGAACTGATGGAGTGGTTCACTATTGTGATGAAGAAAACGGCCAATCCTCACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.049

99.515

0.578

Multiple sequence alignment